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Showing 20 records out of 51 total
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Categories: proteomics, (post-translational modification) - Software type(s): website - tool
NetCorona predicts coronavirus 3C-like proteinase (or protease) cleavage sites using artificial neural networks on amino acid sequences. Every potential site is scored and a list is compiled in addition to a graphical representation.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Predicts glycation of epsilon amino groups of lysines in mammalian proteins.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
NetNES 1.1 server predicts leucine-rich nuclear export signals (NES) in eukaryotic proteins using a combination of neural networks and hidden Markov models.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
NetNGlyc predicts N-Glycosylation sites in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
NetPhos produces neural network predictions for serine, threonine and tyrosine phosphorylation sites in eukaryotic proteins.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
The NetPhosK 1.0 server produces neural network predictions of kinase specific eukaryotic protein phosphorylation sites. Currently NetPhosK covers the following kinases: PKA, PKC, PKG, CKII, Cdc2, CaM-II, ATM, DNA PK, Cdk5, p38 MAPK, GSK3, CKI, PKB, RSK, INSR, EGFR and Src.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
predict serine and threonine phosphorylation sites in yeast proteins
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
The NetPicoRNA 1.0 server produces neural network predictions of cleavage sites of picornaviral proteases.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Prediction of N-terminal N-myristoylation of proteins
Categories: proteomics - Software type(s): website - tool
PATS identifies amino acid sequences that are potentially targeted to the apicoplast matrix of Plasmodium falciparum. Secondary analysis of candidate sequences is required for confirmation.
Categories: proteomics, (protein sequences and identification) - Software type(s): website - tool
Cleave a protein sequence with a chosen enzyme/protease, and computes the masses of the generated peptides. The tool also returns theoretical isoelectric point and mass values for the protein of interest. If desired, PeptideMass can return the mass of peptides known to carry post-translational modifications, and can highlight peptides whose masses may be affected by database conflicts, polymorphisms or splice variants.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Predotar was designed for systematic screening of large batches of proteins for identifying putative targeting sequences, and recognizes the N-terminal targeting sequences of classically targeted precursor proteins. It provides a probability estimate as to whether the sequence contains a mitochondrial, plastid or ER targeting sequence.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
The prenylation prediction suite (PrePS) combines three predictors for protein CaaX farnesylation, CaaX geranylgeranylation and Rab geranylgeranylation in one webinterface. The predictors aim to model the substrate-enzyme interactions based on refinement of the recognition motifs for each of the prenyltransferases.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
ProP 1.0 server predicts arginine and lysine propeptide cleavage sites in eukaryotic protein sequences using an ensemble of neural networks. Furin-specific prediction is the default. It is also possible to perform a general proprotein convertase (PC) prediction.
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
PSORT family of programs for subcellular localization prediction
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
predict peroxisomal targeting signal 1 containing proteins
Categories: proteomics, (mass spectrometry and 2-DE data, post-translational modification) - Software type(s): CLI, GUI - tool
QuickMod is a spectral library search based MSMS data analysis tool, designed to identify modified peptides. The QuickMod algorithm assumes that the precursor mass difference between a query spectrum and a candidate library spectrum can be explained by a modification. Based on this assumption the two spectra are aligned and the fit of the spectral alignment is assigned a similarity score. In a second step the most likely attachment position of the modification is determined.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
The SecretomeP 2.0 server produces ab initio predictions of non-classical i.e. not signal peptide triggered protein secretion. The method queries a large number of other feature prediction servers to obtain information on various post-translational and localizational aspects of the protein, which are integrated into the final secretion prediction.
Categories: proteomics, (post-translational modification) - Software type(s): website, CLI - tool
SignalP predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
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