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PROSITE entry PS51832


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PURL: https://purl.expasy.org/prosite/signature/PS51832

Direct ScanProsite submission
General information about the entry

Entry name [info] HD_GYP
Accession [info] PS51832
Entry type [info] MATRIX
Date [info] 10-MAY-2017 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51831
Associated ProRule [info] PRU01176

Name and characterization of the entry

Description [info] HD-GYP domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=198;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=193;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9501035; R2=0.0128349; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=628; N_SCORE=10.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=355; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Post-processing [info]

COMPETES_HIT_WITH PS51831; PS51833

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 11 in 11 different sequences
Number of true positive hits 11 in 11 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] HD-GYP
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
11 sequences

CDPD1_PSEAE (Q9HWS0), CDPD1_VIBCH (Q9KSG1), CDPD2_PSEAE (Q9HV27), 
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PDB
[Detailed view]
2 PDB

4R8Z; 5Z7C