PROSITE entry PS51826
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General information about the entry
| Entry name [info] | PSBD |
| Accession [info] | PS51826 |
| Entry type [info] | MATRIX |
| Date [info] |
15-FEB-2017 CREATED;
13-FEB-2019 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51826 |
| Associated ProRule [info] | PRU01170 |
Name and characterization of the entry
| Description [info] | Peripheral subunit-binding (PSBD) domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=38; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=35; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8716874; R2=0.0078783; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3992.8278809; R2=0.7047478; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=969; H_SCORE=4676; N_SCORE=10.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=461; H_SCORE=4318; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-64; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='H'; M= -51,-121, -32,-109, 38,-119, 51, 17, 14, 7, -99, 35, -16,-105, 34, -15, 6, -17,-115, 30; /M: SY='A'; M= 80,-113,-119,-112, -21,-107,-114, -22,-113, 27, 28,-114, -16, -21,-116, -8,-102, -22,-118, 2; /M: SY='S'; M= 3,-112,-108,-107, -37, -50,-110,-109, -21, -18, 36, -97,-112,-102,-110, 83, 69,-104,-128,-111; /M: SY='P'; M=-114,-139,-114,-103,-134,-116,-117,-121,-110,-132,-118,-121, 134,-114,-123,-111,-106,-127,-127,-131; /M: SY='S'; M= 50,-114,-114,-110, -42,-107,-112,-101,-110, 26,-101,-107, 16,-106, -20, 66, -14, 9,-122, -8; /M: SY='A'; M= 77,-112,-123,-116,-110,-111,-123, 16,-116, -97, 9,-117,-119,-114,-119,-100,-100, 71,-127,-113; /M: SY='R'; M= -21,-127,-109, -97,-124,-119,-102,-127, 48, -75,-111,-102,-119, 5, 107, -11,-109,-121,-123,-111; /M: SY='K'; M= -12,-124,-105, -96, -48,-116,-102,-121, 80, -33, -36, 32,-117, -18, 75,-104, -59,-118,-120, -10; /M: SY='L'; M=-115,-120,-126, -56, -51,-132, -1, 30,-117, 79, -82,-124,-129,-114, 3,-121,-110, -44,-110, 56; /M: SY='A'; M= 88,-112,-120,-113,-110,-106,-117, 7,-114, 22, 46,-115,-118,-110,-117, -97,-102, -20,-123,-112; /M: SY='R'; M= 27,-121, -17, 38,-121, -66, 3, -67, 45, -29, -21,-102,-114, -93, 66, 2, -11, -41,-125,-112; /M: SY='E'; M=-108,-127, 37, 95,-127, -39, -19, -32, 34,-120, 15, -34,-107, 6, -96, -54,-107,-120,-128,-116; /M: SY='H'; M= -11,-120,-103,-106, 0, -56, 92,-110, 34, 31,-100, 74,-121, -40, -46,-104,-106,-112,-124, 11; /M: SY='G'; M= -21,-121, 18,-108,-128, 80, -33,-131, 22,-130,-120, 63,-116,-105,-109, 3,-105,-126,-127,-120; /M: SY='I'; M=-108,-119,-132,-127, -95,-134,-126, 74,-124, 43, 11,-126,-126,-121,-125,-119,-104, 64,-123, -34; /M: SY='D'; M= -24,-125, 99, 26,-131,-111,-100,-130, -18,-128,-123, 39, -40, -19, 26, -9,-103,-125,-139,-117; /I: I=-24; MI=0; MD=-61; IM=0; DM=-61; /M: SY='L'; M= 36,-117,-125,-118, -59,-122,-118, 30, -30, 72, -86,-122, 22,-115,-119, -47,-106, -25,-121,-106; /M: SY='S'; M= 26,-117, 20, 6,-120, -51,-106,-118, 24, -61,-114, 28,-114, -37, -4, 70, -40, -37, 29, -29; /M: SY='Q'; M= -2,-121, 21, 43, -2, -22,-103, -37, -29, -12,-108, 31,-114, 69, -60, 24, -4, -63,-123, -35; /M: SY='V'; M=-105,-119,-129,-126,-101, 2,-131, 78,-123, -41, -88,-122,-123, -34,-125,-115,-103, 80,-127,-108; /M: SY='T'; M= 19,-117,-105, -23,-121,-111, -2, -82, 43, -66,-109, 0, 20, 36, -15, 32, 61, -22,-128,-113; /M: SY='G'; M= 44, -9,-113,-117,-128, 91,-118,-129,-115,-128,-118,-102, 30,-113,-122, -62, -49,-121,-123,-124; /M: SY='T'; M= -36,-111, -35, -28,-119, -59,-111,-114, -1,-117,-112, -94,-109,-101,-107, 74, 93,-106,-132,-114; /M: SY='G'; M= -97,-123, -47,-121,-128, 105,-118,-133,-116, -50,-120, -98,-116,-114,-123, -28, -17,-127,-122,-124; /I: I=-26; MD=-65; /M: SY='P'; M= -23,-132,-115, -51,-131, -39,-117, -70, 36,-127,-117, -52, 102,-109, 4, -7, -30, -12,-130,-126; D=-26; /I: I=-26; MI=-65; MD=-65; IM=-65; DM=-65; /M: SY='N'; M= -41,-124, 33, -31, -48, 41, 53, -53, 22, -71, -23, 63,-118, -4, 36,-102,-108,-123,-128, -18; D=-26; /I: I=-26; DM=-65; /M: SY='G'; M=-103,-127, 23,-116,-133, 95,-115,-139,-113,-135,-125, 30,-119, -28, -27,-100,-115,-133,-128,-126; D=-26; /I: I=-26; DM=-65; /M: SY='R'; M=-113,-129,-115, -46,-120,-127,-107, -23, -46,-114,-108,-109,-124, -8, 108,-110, -34, 30,-127,-112; /M: SY='I'; M=-111,-122,-135,-130, -10,-137,-131, 87,-127, 25, -86,-128,-127,-125,-129,-122,-107, 54,-124,-105; /M: SY='T'; M=-108,-117,-119,-116,-105,-127,-117, -14,-108, 48, -21,-111,-120,-112, 34,-103, 82, 15,-129,-109; /M: SY='K'; M= -24,-127,-107, -50,-126,-120, 3, -28, 100,-122,-112,-100,-115, -46, 48,-107,-108, -52,-123,-113; /M: SY='E'; M= 20, -42, 21, 81,-130, 13,-107,-128, 10,-125,-119,-102,-111, 32,-102, -7,-107, -75,-128, -51; /M: SY='D'; M=-117,-131, 123, -81,-137,-114, 5,-136,-104,-133,-132, -85,-117,-103,-113,-105,-107,-133,-153,-119; /M: SY='V'; M= -6,-118,-132,-127,-102,-132,-132, 60,-125, 0, -89,-126,-126,-124,-127,-116,-103, 85,-131,-109; /M: SY='D'; M=-113,-124, 58, 56,-111,-125,-109, -58, -26, 55, -99,-108,-119, 21,-110, -52, -54, -19,-129,-112; /M: SY='A'; M= 60,-118, -70, 16,-125, -44,-109,-119, 30, -44,-112, 41,-116, 7, 7, 19, -30, -69,-128,-118; /M: SY='Y'; M= 32,-121,-116, -18, 56,-118, 46,-107, -22, -26,-103,-113,-124,-110,-112, 3, -12, -33,-100, 87; /M: SY='Q'; M= 8,-121, -59, -53,-107, -59,-117, 36, -11, 39, -3,-117, -41, 49, -26, -45, -50, 35,-125,-109; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 96 in 96 different sequences |
| Number of true positive hits | 96 in 96 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | Peripheral subunit-binding (PSBD) |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
96 sequences
ACOC_BACSU (O31550), BKDC_MYCTU (O06159), ODB2_ARATH (Q9M7Z1), ODB2_BACSU (P37942), ODB2_BOVIN (P11181), ODB2_CAEEL (Q23571), ODB2_HUMAN (P11182), ODB2_MOUSE (P53395), ODB2_PSEAE (Q9I1M0), ODB2_PSEPU (P09062), ODO2_AZOVI (P20708), ODO2_BACSU (P16263), ODO2_BARQU (Q6FYD4), ODO2_BARVB (Q8GCY1), ODO2_BUCBP (Q89AJ6), ODO2_CUPNH (P52993), ODO2_ECO57 (P0AFG7), ODO2_ECOLI (P0AFG6), ODO2_HAEIN (P45302), ODO2_PSEAE (Q9I3D2), ODO2_RICBR (Q1RHI5), ODO2_RICCN (Q92J43), ODO2_RICFE (Q4UKI7), ODO2_RICPR (Q9ZDY4), ODO2_RICTY (Q68XI8), ODO2_STAA3 (Q2FH26), ODO2_STAA8 (Q2FYM2), ODO2_STAAB (Q2YY06), ODO2_STAAC (Q5HG07), ODO2_STAAM (Q99U75), ODO2_STAAN (Q7A5N4), ODO2_STAAR (Q6GGZ6), ODO2_STAAS (Q6G9E9), ODO2_STAAW (Q8NWR7), ODO2_STAEQ (Q5HPC7), ODO2_STAES (Q8CSL9), ODO2_STAHJ (Q4L6C3), ODO2_STAS1 (Q49XM4), ODP21_ARATH (Q0WQF7), ODP22_ARATH (Q8RWN9), ODP23_ARATH (Q5M729), ODP24_ARATH (Q9SQI8), ODP25_ARATH (Q9C8P0), ODP2_ACHLA (P35489), ODP2_AZOVI (P10802), ODP2_BACSU (P21883), ODP2_BOVIN (P11180), ODP2_BUCAI (P57302), ODP2_BUCAP (Q8K9T8), ODP2_BUCBP (Q89AQ9), ODP2_CAEEL (Q19749), ODP2_CHATD (G0S4X6), ODP2_CORGL (Q8NNJ2), ODP2_CUPNH (Q59098), ODP2_DICDI (P36413), ODP2_ECOLI (P06959), ODP2_FUSO4 (A0A0D2Y5A7), ODP2_GEOSE (P11961), ODP2_HAEIN (P45118), ODP2_HUMAN (P10515), ODP2_LEIXX (Q6ABX9), ODP2_MESAU (P86197), ODP2_MOUSE (Q8BMF4), ODP2_MYCBO (P65634), ODP2_MYCCT (Q49110), ODP2_MYCTO (P9WIS6), ODP2_MYCTU (P9WIS7), ODP2_NEUCR (P20285), ODP2_PSEAE (Q59638), ODP2_RAT(P08461), ODP2_RHIME (Q9R9N3), ODP2_RICBR (Q1RJT3), ODP2_RICCN (Q92HK7), ODP2_RICFE (Q4ULG1), ODP2_RICPR (Q9ZD20), ODP2_RICTY (Q68WK6), ODP2_SCHPO (O59816), ODP2_STAAC (Q5HGY9), ODP2_STAAM (P65635), ODP2_STAAN (P65636), ODP2_STAAR (Q6GHZ0), ODP2_STAAS (Q6GAB9), ODP2_STAAU (Q59821), ODP2_STAAW (Q8NX76), ODP2_STAEQ (Q5HQ74), ODP2_STAES (Q8CT13), ODP2_YEAST (P12695), ODP2_ZYMMO (O66119), ODPX_BOVIN (P22439), ODPX_CHATD (G0S5Q0), ODPX_HUMAN (O00330), ODPX_MESAU (P86238), ODPX_MOUSE (Q8BKZ9), ODPX_SCHPO (O94709), ODPX_YEAST (P16451), Y1564_DICDI (Q86AD5)» more
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| PDB [Detailed view] |
36 PDB
1BAL; 1BBL; 1EBD; 1W3D; 1W4E; 1W4F; 1W4G; 1W4H; 1W85; 1W88; 1ZWV; 1ZY8; 2BTG; 2BTH; 2COO; 2CYU; 2F5Z; 2F60; 2PDD; 2PDE; 2WXC; 3DUF; 3DV0; 3DVA; 3RNM; 6CT0; 6H55; 6H60; 6ZLM; 6ZZL; 7B9K; 7BGJ; 7OTT; 7Q5R; 7UOM; 8OHS » more |