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PROSITE entry PS51779


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51779
Entry name [info] POTRA
Accession [info] PS51779
Entry type [info] MATRIX
Date [info] 01-OCT-2015 CREATED;
01-OCT-2015 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51779
Associated ProRule [info] PRU01115

Name and characterization of the entry

Description [info] POTRA domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=72;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=72;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6020532; R2=0.0070103; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=949; N_SCORE=9.25; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=557; N_SCORE=6.5; MODE=1; TEXT='RR';
/DEFAULT: M0=-43; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 522 in 218 different sequences
Number of true positive hits 522 in 218 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 5
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] POTRA
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
218 sequences

BAMA1_HAEIF (P46024), BAMA2_HAEIF (O32629), BAMA_BUCAI  (P57331), 
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PDB
[Detailed view]
96 PDB

2QCZ; 2QDF; 2V9H; 2VH1; 3EFC; 3NJT; 3OG5; 3Q6B; 4BZA; 4C00; 4C4V; 4PK1;
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