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PROSITE entry PS51778


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51778
Entry name [info] VAST
Accession [info] PS51778
Entry type [info] MATRIX
Date [info] 01-OCT-2015 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51778
Associated ProRule [info] PRU01114

Name and characterization of the entry

Description [info] VASt domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=171;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=166;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0677447; R2=0.0067191; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=31429.5878906; R2=4.0717344; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1404; H_SCORE=37146; N_SCORE=11.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=660; H_SCORE=34117; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-32; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 24 in 20 different sequences
Number of true positive hits 24 in 20 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] VASt
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
20 sequences

ASTRA_HUMAN (Q96CP6), ASTRA_MOUSE (Q8VEF1), ASTRA_RAT   (Q3KR56), 
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PDB
[Detailed view]
12 PDB

5YQI; 5YQJ; 5YQP; 5YQQ; 5YS0; 6BYD; 6BYM; 6CAY; 6GN5; 6GQF; 7AZN; 8AXW