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PROSITE entry PS51725


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51725
Entry name [info] ABM
Accession [info] PS51725
Entry type [info] MATRIX
Date [info] 01-JUL-2014 CREATED;
01-JUL-2014 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51725
Associated ProRule [info] PRU01062

Name and characterization of the entry

Description [info] ABM domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=89;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=84;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1464617; R2=0.0073789; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1133; N_SCORE=9.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=726; N_SCORE=6.5; MODE=1; TEXT='RR';
/DEFAULT: M0=-11; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 120 in 120 different sequences
Number of true positive hits 120 in 120 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.36 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] ABM
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
120 sequences

CURD_STRCN  (Q02587), HDOX1_STAA3 (Q2FHU5), HDOX1_STAA8 (Q2FZE2), 
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UniProtKB/Swiss-Prot
False negative sequences
2 sequences

ABM_PYRO7   (P0CU79), GME64_PESMI (A0A5B8YU67)

		
PDB
[Detailed view]
30 PDB

1Q8B; 1R6Y; 1SQE; 1TUV; 1XBW; 1Y0H; 2GFF; 2GO8; 2ZDO; 2ZDP; 3HX9; 3KG0;
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