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PROSITE entry PS51704


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PURL: https://purl.expasy.org/prosite/signature/PS51704

Direct ScanProsite submission
General information about the entry

Entry name [info] GP_PDE
Accession [info] PS51704
Entry type [info] MATRIX
Date [info] 01-FEB-2014 CREATED;
01-FEB-2014 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51704
Associated ProRule [info] PRU01041

Name and characterization of the entry

Description [info] GP-PDE domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=253;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=248;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3443367; R2=0.0081201; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=759; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=512; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-28; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 70 in 63 different sequences
Number of true positive hits 70 in 63 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] GP-PDE
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
63 sequences

GDE1_BOVIN  (Q3T0T0), GDE1_CANAL  (A0A1D8PNZ7), GDE1_EREGS  (Q74ZH9), 
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PDB
[Detailed view]
8 PDB

1T8Q; 1YDY; 2PZ0; 5T91; 5T9B; 5T9C; 5VUG; 8CWP