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PROSITE entry PS51686


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51686
Entry name [info] SAM_MT_RSMB_NOP
Accession [info] PS51686
Entry type [info] MATRIX
Date [info] 01-AUG-2013 CREATED;
01-AUG-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51555
Associated ProRule [info] PRU01023

Name and characterization of the entry

Description [info] SAM-dependent MTase RsmB/NOP-type domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=290;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=285;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3404417; R2=0.0192353; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=321; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=217; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-75; I=-75; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 217 in 217 different sequences
Number of true positive hits 217 in 217 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SAM-dependent MTase RsmB/NOP-type
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
217 sequences

NCL1_YEAST  (P38205), NOP2A_ARATH (Q9FG73), NOP2B_ARATH (Q8VYM6), 
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PDB
[Detailed view]
51 PDB

1SQF; 1SQG; 2B9E; 2FRX; 3A4T; 3AJD; 3M6U; 3M6V; 3M6W; 3M6X; 4FP9; 4FZV;
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