PROSITE logo

PROSITE entry PS51554


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS51554

Direct ScanProsite submission
General information about the entry

Entry name [info] PFL
Accession [info] PS51554
Entry type [info] MATRIX
Date [info] 01-DEC-2011 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51554
Associated ProRule [info] PRU00887

Name and characterization of the entry

Description [info] Pyruvate formate-lyase domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=648;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=643;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0929415; R2=0.0097701; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=70503.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=707; H_SCORE=70503; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=452; H_SCORE=70503; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-34; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 36 in 36 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] PFL
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
36 sequences

BSSA_THAAR  (O87943), CUTC_OLEA2  (Q30W70), GRE1_ECOLI  (P32674), 
» more

PDB
[Detailed view]
26 PDB

1CM5; 1H16; 1H17; 1H18; 1MZO; 1QHM; 2PFL; 2Y8N; 2YAJ; 3PFL; 5FAU; 5FAV;
» more