PROSITE logo

PROSITE entry PS51553


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51553
Entry name [info] GMPS_ATP_PPASE
Accession [info] PS51553
Entry type [info] MATRIX
Date [info] 01-NOV-2011 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51553
Associated ProRule [info] PRU00886

Name and characterization of the entry

Description [info] GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=195;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=190;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0186124; R2=0.0233830; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=7530.0971680; R2=13.0242424; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=513; H_SCORE=14212; N_SCORE=15.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=149; H_SCORE=9471; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-10; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 626 in 626 different sequences
Number of true positive hits 626 in 626 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.84 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] GMPS ATP-PPase
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
626 sequences

GUAA1_BACTN (Q89ZV6), GUAA2_BACTN (Q8A525), GUAAB_ARCFU (O29986), 
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

GUAA_FRUSA  (P83540)

		
PDB
[Detailed view]
14 PDB

1GPM; 2DPL; 2VXO; 2YWB; 2YWC; 3A4I; 3TQI; 3UOW; 4WIM; 4WIO; 5TW7; 6JP9;
» more