PROSITE logo

PROSITE entry PS51476


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51476
Entry name [info] PROTEASOME_BETA_2
Accession [info] PS51476
Entry type [info] MATRIX
Date [info] 01-JAN-2010 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00668
Associated ProRule [info] PRU00809

Name and characterization of the entry

Description [info] Proteasome beta-type subunit profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=180;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=175;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.1559343; R2=0.0070020; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=32996.4609375; R2=11.6694050; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=3334; H_SCORE=71902; N_SCORE=26.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=478; H_SCORE=38574; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-60; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
» more

Post-processing [info]

COMPETES_SEQ_WITH PS51475

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 738 in 738 different sequences
Number of true positive hits 738 in 738 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
738 sequences

CLPQ_BACLD  (Q65JN4), CLPQ_BACP2  (A8FD79), CLPQ_BACSU  (P39070), 
» more

PDB
[Detailed view]
554 PDB

1E94; 1FNT; 1G0U; 1G3I; 1G3K; 1G4A; 1G4B; 1G65; 1HQY; 1HT1; 1HT2; 1IRU;
» more