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PROSITE entry PS51475


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51475
Entry name [info] PROTEASOME_ALPHA_2
Accession [info] PS51475
Entry type [info] MATRIX
Date [info] 01-JAN-2010 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00326
Associated ProRule [info] PRU00808

Name and characterization of the entry

Description [info] Proteasome alpha-type subunit profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=214;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=209;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5641556; R2=0.0073515; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=44320.4765625; R2=12.0793648; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=4549; H_SCORE=99270; N_SCORE=36.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=536; H_SCORE=50795; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-71; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Post-processing [info]

COMPETES_SEQ_WITH PS51476

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 238 in 238 different sequences
Number of true positive hits 238 in 238 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
238 sequences

PSA1A_ARATH (P34066), PSA1B_ARATH (O23712), PSA1_BOVIN  (Q3T0X5), 
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UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PSMA_HALDO  (P84799)

		
PDB
[Detailed view]
551 PDB

1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1J2Q; 1JD2; 1PMA; 1Q5Q; 1Q5R; 1RYP; 1YA7;
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