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PROSITE entry PS51450


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PURL: https://purl.expasy.org/prosite/signature/PS51450

Direct ScanProsite submission
General information about the entry

Entry name [info] LRR
Accession [info] PS51450
Entry type [info] MATRIX
Date [info] 01-DEC-2009 CREATED;
01-DEC-2009 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51450
Associated ProRule [info] PRU00785

Name and characterization of the entry

Description [info] Leucine-rich repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=22;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=22;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.4886985; R2=0.0077007; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=846; N_SCORE=7.0; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=521; N_SCORE=4.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-18; D=-80; I=-80; B0=-55; E0=-55; B1=-200; E1=-200; MI=-55; MD=-55; IM=-55; DM=-55;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 8'626 in 1'013 different sequences
Number of true positive hits 8'626 in 1'013 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 139
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.41 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 29
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
1013 sequences

A2GL_HUMAN  (P02750), AGRA2_DANRE (E7FBY6), AGRA2_HUMAN (Q96PE1), 
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UniProtKB/Swiss-Prot
False negative sequences
139 sequences

ATP5S_BOVIN (P22027), ATP5S_HUMAN (Q99766), ATP5S_MACFA (Q4R5S4), 
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PDB
[Detailed view]
537 PDB

1A9N; 1D0B; 1DFJ; 1DS9; 1FO1; 1FT8; 1G9U; 1GWB; 1H6T; 1H6U; 1JL5; 1KOH;
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