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PROSITE entry PS51425


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PURL: https://purl.expasy.org/prosite/signature/PS51425

Direct ScanProsite submission
General information about the entry

Entry name [info] SCD
Accession [info] PS51425
Entry type [info] MATRIX
Date [info] 01-JAN-2009 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51425
Associated ProRule [info] PRU00750

Name and characterization of the entry

Description [info] Stromalin conservative (SCD) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=86;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=81;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0093286; R2=0.0164597; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=6050.4150391; R2=5.0283017; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=516; H_SCORE=8645; N_SCORE=10.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=273; H_SCORE=7423; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-14; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SCD
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

REC11_SCHPO (Q92380), SCC3_ARATH  (O82265), SCC3_CAEEL  (Q19555), 
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PDB
[Detailed view]
16 PDB

4PJU; 4PJW; 4PK7; 5QST; 5QSU; 5QSV; 5QSW; 5QSX; 6H8Q; 6QB5; 6QNX; 6RRC;
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