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PROSITE entry PS51399


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PURL: https://purl.expasy.org/prosite/signature/PS51399

Direct ScanProsite submission
General information about the entry

Entry name [info] SEP
Accession [info] PS51399
Entry type [info] MATRIX
Date [info] 01-AUG-2008 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51399
Associated ProRule [info] PRU00732

Name and characterization of the entry

Description [info] SEP domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=66;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=61;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4773149; R2=0.0089281; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9002.6689453; R2=1.0923424; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=675; H_SCORE=9740; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=451; H_SCORE=9495; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-47; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 27 in 26 different sequences
Number of true positive hits 27 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SEP
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
26 sequences

NSF1C_BOVIN (Q3SZC4), NSF1C_CHICK (Q5ZK10), NSF1C_DICDI (Q54BQ5), 
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PDB
[Detailed view]
6 PDB

1SS6; 1VAZ; 6OPC; 7R7S; 7R7T; 8UB4