PROSITE logo

PROSITE entry PS51387


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51387
Entry name [info] FAD_PCMH
Accession [info] PS51387
Entry type [info] MATRIX
Date [info] 01-JUN-2008 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51387
Associated ProRule [info] PRU00718

Name and characterization of the entry

Description [info] PCMH-type FAD-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=179;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=174;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.5420240; R2=0.0053890; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=25121.4121094; R2=5.5338078; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1292; H_SCORE=32271; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=921; H_SCORE=30218; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-15; D=-120; I=-120; B1=-300; E1=-300; MI=-205; MD=-205; IM=-205; DM=-205;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 772 in 772 different sequences
Number of true positive hits 772 in 772 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Feature key [info] DOMAIN
Feature description [info] FAD-binding PCMH-type
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
772 sequences

A2372_ARTBC (D4B1P2), A2478_ARTBC (D4B1Z7), A7056_ARTBC (D4AS41), 
» more

PDB
[Detailed view]
221 PDB

1AHU; 1AHV; 1AHZ; 1DII; 1DIQ; 1DZN; 1E0Y; 1E8F; 1E8G; 1E8H; 1F0X; 1FFU;
» more