PROSITE entry PS51370

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PURL: https://purl.expasy.org/prosite/signature/PS51370

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General information about the entry

Entry name [info]	R
Accession [info]	PS51370
Entry type [info]	MATRIX
Date [info]	01-FEB-2008 CREATED; 13-FEB-2019 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC51370
Associated ProRule [info]	PRU00702

Name and characterization of the entry

Description [info]

R domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=18;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=17;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3189075; R2=0.0066435; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=831.7242432; R2=0.5957580; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=931; H_SCORE=1386; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=630; H_SCORE=1207; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-34; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;

...

                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-105; BD=-105;
/M: SY='K';  M=-35,-60,-46,-34,-50,-49,-54,-55, 82,-54,-39,-34,-22,-42, 38, 21, -3,-45,-55,-51;
/M: SY='E';  M=  0,-47, 20, 76,-59,-12,-48,-36,-31,-10, 36,-47,-46,-41,-51,-47,-49,  5,-53,-53;
/M: SY='S';  M=-39,-53,-45,-23,-11,-22,-48,-18,-42, -3,-45,  7,-44,-48,-49, 86,-15,-47,-60,-20;
/M: SY='R';  M=-48,-57,-51,-49,-48,-12,-51,-60,-23,-56,-45,-54,-50,-27,104,-46,-59,-52,  1,-39;
/M: SY='A';  M= 64, 31, -2, 43,-54,-18,-53,-20,-42,-45,-43,-45,-48,-40,-50,-35, -8, 14,-60,-60;
/M: SY='K';  M=-44,-59,-44,-32,-50,-49,-53,-54, 90,-51,-21, 11,-41, 24, 31,-41,-49,-54,-53,-50;
/M: SY='A';  M= 91,-56,-40,-37,-52,-45,-55,-45,-44,-50,-39,-43,-49,-37,-49,-36, 10,-23,-70,-67;
/M: SY='R';  M=-48,-56,-51,-49,-48,-55,-50,-60,-34,-56,-45,-54,-51,-26,107,-46,-59,-51,-45,-39;
/M: SY='A';  M= 79,-53,-40, 38,-55, -9,-52,-48,-25,-51,-41,-44,-40, 11,-42,-39,-33,-35,-61,-64;
/M: SY='R';  M=-48,-58,-49,-44,-49,-53,-50,-59, 35,-56,-43,-52, 12,-29, 96,-45,-56,-52,-47,-42;
/M: SY='A';  M= 89,-61,-44,-49,-56, -5,-59,-49,-48,-55,-43,-47,-52,-41,-53,-40,-42,-41,-71,-72;
/M: SY='R';  M=-52,-59,-53, -3,-53,-54,-54,-64,  8,-59,-42,-56,-52,-31, 97,-47,-61,-56,-49,-44;
/M: SY='E';  M=-31,-50,-41, 89,-75,-34,-53,-70,-20,-58,-57,-57,-49,-44,-59,-55,-63,-70,-58,-66;
/M: SY='R';  M=-58,-67,-61,-60,-58,-57,-61,-70,-44,-66,-55,-64,-60,-36, 96,-55,-30,-61,-56,-49;
/I:         I=-12; MI=0; MD=-25; IM=0; DM=-25;
/M: SY='T';  M= -5,-69,-57,-43,-67,-62,-67,-57,-59,-56,-58,-50,-21,-57,-69, 10, 88,-51,-83,-65;
/M: SY='K';  M=-56,-34,-59,-46,-62,-56,-62,-65, 53,-64, 32,  3,-60,-46, 45,  4,-35,-64,-66,-61;
/M: SY='E';  M=-12,-55,-18, 76,-75,-65,-58,-62,-13,-61,-59,  6,-54,-49,-62,-57,-43,-70,-65,-42;
/M: SY='K';  M=-29,-74,-59,-41,-63,-63,-65,-67, 75,-65, 25,-57,-56,-53, 29,-55,-57,-65,-66,-62;
/I:         E1=0; IE=-105; DE=-105;

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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	11 in 11 different sequences
Number of true positive hits	11 in 11 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	2
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	84.62 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	DOMAIN
Feature description [info]	R
Version [info]	6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

11 sequences

CYCLD_ANTCI (Q9SBV9), CYCLD_ANTLN (Q9SBV6), CYCLD_ANTMA (O49250),

DICH_ANTMA  (Q9SNW8), TB1_MAIZE   (Q93WI2), TB1_ORYSJ   (Q8LN68), 
TCP12_ARATH (A0AQW4), TCP18_ARATH (A1YKT1), TCP1_ARATH  (Q9FYG7), 
TCP24_ARATH (Q9C758), TCP2_ARATH  (Q93V43)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

2 sequences

AUXI1_ARATH (Q9SU08), AUXI2_ARATH (Q0WQ57)