PROSITE entry PS51359
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General information about the entry
| Entry name [info] | COX5B_2 |
| Accession [info] | PS51359 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2008 CREATED;
10-MAY-2017 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00663 |
| Associated ProRule [info] | PRU00692 |
Name and characterization of the entry
| Description [info] | Cytochrome c oxidase subunit Vb, zinc binding domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=100; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=95; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8524109; R2=0.0047637; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=15732.1523438; R2=8.5646677; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=1816; H_SCORE=31286; N_SCORE=10.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=976; H_SCORE=24091; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-16; D=-80; I=-80; B1=-500; E1=-500; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='A'; M= 36, -44, -42, -37, -44, -12, -41, -38, -35, -43, -38, -35, 13, -35, -11, 15, -5, -10, -50, -2; /M: SY='H'; M= 12, 37, -25, -18, -35, -29, 51, -33, 29, 1, -22, 5, -35, 29, 3, 18, -20, -30, -45, -25; /M: SY='P'; M= 4, -38, 15, 13, -26, -6, -24, -27, 3, -16, -26, -21, 33, -20, -26, 19, 8, -2, -34, 33; /M: SY='G'; M= -2, -36, -28, -27, -39, 50, -30, -32, 24, -34, 24, -17, -32, -21, -22, 36, -18, -4, -42, -33; /M: SY='T'; M= 1, -34, -22, 18, -33, -7, -26, -22, -19, -10, 34, 4, -30, 19, -2, 9, 44, 1, -46, -29; /M: SY='M'; M= -25, -35, 5, -34, 18, -43, -34, 28, -35, 25, 47, -32, -40, -33, -37, -1, 4, 33, -40, -18; /M: SY='P'; M= -1, -44, -4, -25, 31, -33, -34, -1, -30, -31, -28, -31, 86, -32, -38, 2, -2, -27, -36, -25; /M: SY='T'; M= 0, -34, 18, -1, -36, -29, 32, 1, -22, -31, -26, 25, 18, -22, -29, 10, 54, -22, -52, -29; /M: SY='D'; M= -29, -43, 74, -7, -40, -32, -24, -35, 6, 2, -31, -11, 36, -21, -26, 3, -1, -35, -54, -33; /M: SY='P'; M= -13, -38, 6, -4, -19, -41, -29, 4, -31, 37, 30, -32, 39, -28, -35, -28, 15, 0, -39, 5; /I: I=-24; MI=0; MD=-77; IM=0; DM=-77; /M: SY='E'; M= 0, -40, 25, 57, -36, -32, -17, -36, -14, -33, 23, 27, -28, 21, -21, -17, 8, -33, -42, 10; /M: SY='Q'; M= -24, -43, -18, 24, -40, -34, 38, -11, -12, -8, -21, -17, -31, 81, -14, 8, 6, -31, -42, -24; /M: SY='A'; M= 60, -30, -26, 7, -36, -22, -32, 5, -25, -27, -23, 14, -32, -23, -31, -10, 9, 5, -44, -34; /M: SY='T'; M= 4, -28, -27, -28, 20, -32, -33, -19, -26, -24, -23, -17, -29, -29, -32, 14, 76, 5, -43, -23; /M: SY='G'; M= -21, -40, 20, -31, 7, 67, -28, -40, -30, -11, -32, 36, -36, -29, -36, -17, -27, -40, -40, -31; /M: SY='L'; M= -27, -37, -34, 10, -16, -43, -33, 21, -33, 51, -4, -36, 14, -28, -36, 1, 7, -9, -40, -24; /M: SY='E'; M= 2, -41, 37, 59, -44, -33, -22, -33, 10, -36, -32, -17, -27, 21, -18, 5, -21, 3, -48, -34; /M: SY='R'; M= -1, -40, -21, -18, -38, -31, 31, -39, 31, -16, -26, 35, -37, -10, 64, -3, -23, -36, -45, -27; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='H'; M= -27, -40, -25, 19, 15, -37, 42, -26, 0, 19, -17, -24, -37, -16, 31, 19, -23, -27, -31, 29; /M: SY='E'; M= -24, -44, -1, 82, -44, -38, 33, -42, -10, -38, -34, -20, -23, -2, -18, 4, -23, -15, -47, -33; /M: SY='M'; M= -31, -39, -48, -40, -9, -47, -30, 27, -38, 49, 61, -44, 13, -32, -38, -39, -28, -6, 41, 16; /M: SY='L'; M= -28, -35, -38, -35, -10, -42, -27, -3, -34, 58, -1, 10, -45, 1, -34, -2, -23, 9, -35, 14; /M: SY='G'; M= 44, -33, -32, -32, 11, 49, -33, -33, -31, -9, -27, -22, -34, -28, -36, 18, -21, -26, -36, -29; /M: SY='K'; M= 20, -36, -30, -3, -27, -35, -30, -1, 52, 24, -14, -26, -34, -18, -11, -24, -22, 5, -39, -28; /M: SY='M'; M= -11, -39, -39, -29, 15, -42, -25, 11, 6, 18, 53, -32, -40, 5, 35, -30, -26, 10, -32, 16; /M: SY='E'; M= 5, -38, 4, 37, 7, -31, -23, -31, 4, -32, -28, 4, -31, 30, 13, 21, 0, -3, -41, -26; /M: SY='G'; M= -16, -39, -26, -37, -36, 76, -28, -47, -31, -45, -36, 18, -34, -29, -37, 1, 5, -42, -35, 16; /I: I=-19; MI=0; MD=-61; IM=0; DM=-61; /M: SY='I'; M= -28, -43, -1, 26, -21, -45, -26, 38, -19, 7, -13, -29, -36, 32, 19, -29, -25, 11, -35, 20; /M: SY='D'; M= -29, -43, 81, 19, -49, -30, -18, -46, 10, -45, -41, 26, -31, 14, -20, -17, 7, -43, -59, -34; /M: SY='P'; M= -11, -43, -39, -31, -23, -41, -34, 21, -28, -1, -16, -38, 69, -32, 6, -30, -23, 33, -37, 19; /M: SY='F'; M= -37, -40, -43, 0, 83, -47, -28, -15, -37, 18, -14, -41, -47, -39, -37, -38, -32, -20, 60, 41; /M: SY='D'; M= -28, -41, 69, 30, -48, 3, -17, -48, 10, -48, -41, 54, -31, -14, -21, -17, -20, -45, -57, -37; /I: I=-24; MI=0; MD=-77; IM=0; DM=-77; /M: SY='M'; M= -2, -33, -44, -38, 36, -39, -30, 9, -35, 32, 68, -35, -40, -31, -35, 1, -4, 10, -33, -13; /I: I=-21; MD=-65; /M: SY='R'; M= -30, -46, 23, -3, -47, 13, -29, -47, 18, -24, -38, 14, -39, -21, 29, 10, -6, -43, -52, -39; D=-21; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='P'; M= -32, -49, -22, 10, -39, -36, -24, -43, 35, -45, -34, 21, 68, -17, 24, -26, -26, -43, -39, 14; D=-21; /I: I=-21; DM=-65; /M: SY='V'; M= -7, -36, -44, -38, 17, -44, -41, 28, -38, 25, -8, -40, 33, -38, -41, -31, -1, 45, -40, -21; /I: I=-19; MI=0; MD=-61; IM=0; DM=-61; /M: SY='D'; M= -37, -51, 38, -22, -37, -47, -33, 15, -28, 12, -22, -29, 2, 34, 5, -34, -32, -8, -52, -34; D=-19; /I: I=-19; DM=-61; /M: SY='T'; M= 11, -35, -30, -24, 4, -34, 12, 20, 29, -22, -20, -21, -33, -21, 10, 9, 32, 7, -41, -23; /M: SY='S'; M= -1, -38, -24, 1, -42, 35, -27, -37, 0, -40, -33, -18, 17, -17, 30, 42, -17, -10, -43, -35; /M: SY='P'; M= 2, -39, -25, -26, -41, 33, -27, -36, -15, -40, -31, 23, 40, -21, 37, 0, 20, -15, -45, -36; /M: SY='F'; M= -10, -36, -31, -27, 61, -32, -26, -25, 25, -1, -22, 13, 1, -25, -1, 24, -20, -26, -26, -8; /M: SY='G'; M= -15, -41, -26, -39, -48, 86, -33, -55, -33, -51, -40, 17, -34, -31, -40, -14, -31, -49, -40, -43; /M: SY='T'; M= -17, -28, -23, -25, -34, -32, -31, -26, -19, -30, -26, -12, -25, -24, 6, 16, 86, -18, -52, -30; /M: SY='M'; M= -28, -40, -32, 5, -26, -42, -28, 10, 33, 17, 46, -30, 19, -18, 24, -30, -24, 11, -41, -26; /M: SY='D'; M= -28, -43, 56, 53, -47, -33, -19, -47, 40, -44, -38, 18, -27, -8, -11, -19, -3, -42, -50, -35; /M: SY='D'; M= -1, 44, 61, -13, -44, -22, -18, -43, -20, -45, -39, 61, -35, -19, -27, 24, -15, -39, -60, -36; /M: SY='P'; M= -31, -57, -32, -20, -51, -33, -35, -39, -28, -49, -36, -38, 113, -32, -41, -29, -24, -44, -44, -49; /M: SY='N'; M= -1, 29, -28, -35, -21, -35, -30, 39, -30, -4, -14, 44, -39, -30, -35, -21, 20, 25, -43, 11; /M: SY='I'; M= -26, -37, -42, -11, -15, -47, -38, 41, -36, 36, 19, -40, -41, 0, -37, -14, -23, 34, 38, -21; /M: SY='V'; M= -19, -33, -49, -43, -18, -50, -51, 40, -41, -3, -6, -43, -43, -42, -42, -32, -17, 75, -50, -26; /I: I=-24; MI=0; MD=-77; IM=0; DM=-77; /M: SY='P'; M= -28, -46, -21, 20, -46, -34, -29, -38, 17, -43, -33, -3, 87, -20, -2, -21, 24, -38, -45, -40; /M: SY='S'; M= 7, -29, -22, -22, -39, -16, -25, -37, -22, -40, -34, -10, -28, -15, -27, 79, 24, -28, -48, -31; /M: SY='C'; M= 22, 44, 1, -6, 15, -11, -28, 18, -30, -8, -18, -29, -39, 14, -32, -23, -24, 6, -29, 39; /M: SY='F'; M= -26, -37, 23, -27, 49, 14, 32, -4, -30, -23, -24, -19, -36, -30, -33, 6, 33, -24, -29, 24; /M: SY='D'; M= -28, -43, 66, -11, -45, 17, 33, -38, -23, -42, -36, 33, 38, -23, -31, -20, -23, -7, -57, -33; /M: SY='E'; M= 24, -38, -20, 34, 20, -30, 24, -36, 3, -32, -27, -22, -33, -14, 29, 16, -22, -30, -31, 22; /M: SY='R'; M= -31, -49, -27, -14, -43, -41, -17, -47, 10, -40, -28, -21, -39, 36, 92, -24, -30, -42, -40, -27; /M: SY='Y'; M= -31, -42, -43, -42, -1, -48, 14, 49, -37, 16, 31, -38, -43, -32, -36, -35, -26, 15, -18, 69; /M: SY='V'; M= 6, -32, -47, -41, -19, -45, -48, 27, -39, 4, -7, -42, -43, -40, -41, -29, -17, 73, -50, -27; /M: SY='G'; M= 6, 38, -31, -40, -46, 82, -37, -52, -35, -48, -39, -17, -35, -33, -42, -15, -31, -44, -41, -43; /M: SY='C'; M= -52, 280, -92, -93, -73, -84, -92, -87, -84, -68, -68, -65,-114,-100, -97, -58, -53, -62,-133, -94; /M: SY='T'; M= -23, -35, -28, 5, -27, -39, -34, 33, -24, -1, -16, -23, 17, -26, -1, -1, 57, 3, -46, -29; /M: SY='C'; M= -36, 189, -69, -86, -88, 144, -79,-103, -74, -89, -76, -41, -80, -75, -89, -38, -62, -84, -93, -89; /M: SY='E'; M= -23, -39, -20, 35, 25, 34, -26, -31, 0, 5, -24, 3, -33, 7, -25, 6, -4, -31, -35, -23; /I: I=-19; MI=0; MD=-61; IM=0; DM=-61; /M: SY='P'; M= -28, -47, 50, 44, -49, -5, -25, -44, -19, -45, -39, -18, 69, -17, -29, -21, 8, -42, -50, -40; /M: SY='G'; M= 18, -40, 43, 8, -33, 43, 37, -44, -25, -40, -33, -14, -33, -21, -30, -2, -25, -38, -38, 27; /I: I=-22; MI=0; MD=-71; IM=0; DM=-71; /M: SY='D'; M= -43, -62, 39, 37, -67, 10, -38, -68, -34, -65, -59, 12, -46, -30, -43, -36, -42, -63, -70, -56; D=-22; /I: I=-22; DM=-71; /M: SY='E'; M= 27, -36, -13, 46, -44, -4, -22, -41, -14, -40, -33, 7, -28, 17, 9, 37, -16, -33, -44, -35; /M: SY='H'; M= -29, -41, 13, -19, -32, -35, 111, -39, -24, -9, -19, -10, -34, -16, -22, -1, 21, -38, -62, -9; /M: SY='N'; M= -7, -36, 34, 26, -41, -28, -23, -31, 3, -37, -32, 38, 16, -17, -24, 9, 32, -2, -52, -35; /I: I=-24; MD=-77; /M: SY='I'; M= -7, -41, -50, -44, -22, -50, -50, 52, -43, 9, -9, -45, 16, -42, -46, -36, -24, 47, -47, -29; D=-24; /I: I=-24; MI=-77; IM=-77; DM=-77; /M: SY='I'; M= -27, -38, -32, -28, -18, -40, 23, 29, 1, 27, 15, 11, -39, 20, -26, -8, -2, 8, -37, 13; /M: SY='W'; M= -40, -56, -64, -46, 48, -41, -56, -29, -39, -8, -29, -56, -46, -40, -41, -45, -46, -40, 152, 9; /M: SY='F'; M= -34, -36, -47, -41, 64, -46, 31, 5, -39, 37, 60, -38, -45, -36, -36, -38, -29, -11, -24, -1; /M: SY='W'; M= -29, -44, 2, 5, -21, -38, 11, -31, -5, -14, 16, -27, -34, -23, 9, -23, 38, -32, 119, -11; /M: SY='L'; M= -10, 39, -47, -40, -14, -46, -38, 18, -40, 49, 20, -43, -6, -37, -41, -35, -24, 34, -42, -24; /M: SY='H'; M= 0, -40, -18, 25, -34, -10, 75, -42, 7, -36, -27, -16, -31, -12, 36, -2, 18, -36, -45, 6; /M: SY='K'; M= -26, -44, -13, 51, -43, -39, -21, -36, 53, -37, -29, -19, -28, 29, 30, -22, -24, -4, -41, -32; /M: SY='G'; M= -22, -43, 52, 11, -49, 59, -26, -52, 17, -49, -41, 7, -31, -20, -24, -17, -27, -47, -47, -38; /M: SY='Q'; M= -26, -43, 15, 36, 8, -35, -21, -40, 36, -37, -30, -17, 11, 43, 19, -3, 2, -37, -39, -26; /I: I=-24; MI=0; MD=-77; IM=0; DM=-77; /M: SY='P'; M= -9, -44, -38, -27, -30, -38, -36, 1, -32, 21, -16, -39, 85, -4, -38, -30, -24, 13, -43, -34; /M: SY='Q'; M= 5, -40, -22, 13, -32, -10, 30, -31, 20, -32, -25, -19, -33, 40, 28, -4, 8, -3, -36, 20; /M: SY='R'; M= -30, -47, -30, -18, -37, -43, -21, 0, 5, -31, -23, -24, -40, 22, 87, -26, -29, -3, -41, -27; /M: SY='C'; M= -52, 280, -92, -93, -73, -84, -92, -87, -84, -68, -68, -65,-114,-100, -97, -58, -53, -62,-133, -94; /I: I=-24; MD=-77; /M: SY='W'; M= -42, -62, -13, -42, -44, -4, -49, -42, -46, -13, 23, -47, 59, -44, -52, -18, -41, -47, 67, -40; D=-24; /I: I=-24; MI=-77; IM=-77; DM=-77; /M: SY='E'; M= -24, -42, 20, 61, -33, -11, 19, -32, -15, -31, 15, 4, -28, 17, -21, -2, -23, -6, -40, 17; /M: SY='C'; M= -52, 280, -92, -93, -73, -84, -92, -87, -84, -68, -68, -65,-114,-100, -97, -58, -53, -62,-133, -94; /M: SY='G'; M= -15, -41, 11, -34, -48, 82, -33, -54, -32, -50, -41, -13, -33, -29, -40, 8, -29, -48, -41, -41; /M: SY='H'; M= -8, -40, -19, -13, -34, -29, 67, -38, -15, -34, -24, 21, -33, 66, -16, 18, 17, -36, -40, 21; /M: SY='W'; M= -26, -41, -44, -38, -14, -44, 44, 17, -36, -14, -15, -38, -42, -34, -36, -32, -7, 53, 100, 23; /M: SY='F'; M= -38, -40, -46, -44, 84, -46, -19, -15, -38, -10, -15, -40, -50, -41, -36, -36, -31, -6, -1, 77; /M: SY='K'; M= -6, -41, -24, -11, -39, -35, -23, -3, 70, -30, 25, -17, -30, 34, 16, -22, -23, -28, -38, -28; /M: SY='L'; M= 3, -35, -44, -37, -12, -43, 31, 16, -38, 56, 46, -39, -43, -31, -36, -34, -27, -6, -39, -18; /M: SY='V'; M= -24, -38, -1, 17, -27, -41, 9, 6, 37, -20, -18, -2, -35, -20, -16, -26, -20, 48, -43, 4; /M: SY='Y'; M= -31, -45, 12, 11, 6, -38, 35, -29, -15, -29, -24, 11, 21, -18, 34, -26, -26, -5, -23, 62; /M: SY='V'; M= -26, -36, -42, -34, 16, -47, 15, 27, 15, 26, 17, -35, -41, -31, -28, -33, -22, 45, -40, -18; /M: SY='G'; M= -5, -43, -26, 5, -42, 52, -29, -40, -21, -12, -30, -22, 42, 8, 15, 7, -26, -38, -41, -37; /M: SY='P'; M= -11, -44, 23, 4, -31, -32, -24, -29, -24, -4, -26, 1, 72, 10, -31, 5, -21, -15, -39, 17; /M: SY='P'; M= 4, -40, 1, 28, -30, 0, -26, -22, -22, -14, -24, -25, 37, 25, -28, 6, -21, 17, -38, 16; /M: SY='G'; M= -35, -50, 11, 9, 7, 29, 16, -45, -36, -13, -37, 13, -45, -32, -41, -11, -36, -45, -46, 3; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 14 in 14 different sequences |
| Number of true positive hits | 14 in 14 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | PS_Langendijk_Genevaux |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 5 |
Cross-references [info]