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PROSITE entry PS51343


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51343
Entry name [info] PII_GLNB_DOM
Accession [info] PS51343
Entry type [info] MATRIX
Date [info] 01-DEC-2007 CREATED;
26-FEB-2020 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00439
Associated ProRule [info] PRU00675

Name and characterization of the entry

Description [info] P-II protein family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=112;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=107;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1379373; R2=0.0070881; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=13978.8349609; R2=5.9032588; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1208; H_SCORE=21110; N_SCORE=10.7; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=616; H_SCORE=17615; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-18; D=-80; I=-80; B1=-500; E1=-500; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 61 in 61 different sequences
Number of true positive hits 61 in 61 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
61 sequences

GLNB1_METBA (P54808), GLNB1_METIV (P51603), GLNB1_METMI (P0CW44), 
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PDB
[Detailed view]
45 PDB

1GNK; 1PIL; 1QY7; 1UL3; 2EG1; 2EG2; 2GNK; 2J9C; 2J9D; 2J9E; 2JJ4; 2NS1;
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