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PROSITE entry PS51310


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PURL: https://purl.expasy.org/prosite/signature/PS51310

Direct ScanProsite submission
General information about the entry

Entry name [info] VPS28_C
Accession [info] PS51310
Entry type [info] MATRIX
Date [info] 01-MAY-2007 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51310
Associated ProRule [info] PRU00642

Name and characterization of the entry

Description [info] VPS28 C-terminal domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=97;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=92;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.9542081; R2=0.0241098; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=231; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=148; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-10; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Post-processing [info]

PROMOTED_BY PS51313

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 12 in 12 different sequences
Number of true positive hits 12 in 12 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] VPS28 C-terminal
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
12 sequences

VP281_ARATH (O65421), VP282_ARATH (Q9S9T7), VPS28_BOVIN (Q3T178), 
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PDB
[Detailed view]
3 PDB

2G3K; 2J9U; 2J9V