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PROSITE entry PS51278


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51278
Entry name [info] GATASE_TYPE_2
Accession [info] PS51278
Entry type [info] MATRIX
Date [info] 01-NOV-2006 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00406
Associated ProRule [info] PRU00609

Name and characterization of the entry

Description [info] Glutamine amidotransferase type 2 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=224;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=219;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2477429; R2=0.0193796; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=375; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=272; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 298 in 298 different sequences
Number of true positive hits 298 in 298 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] PS_Langendijk_Genevaux
Feature key [info] DOMAIN
Feature description [info] Glutamine amidotransferase type-2
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
298 sequences

ASE1_ARATH  (Q9SI61), ASE2_ARATH  (Q9STG9), ASE3_ARATH  (Q9T0J5), 
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UniProtKB/Swiss-Prot
False negative sequences
1 sequence

ASND1_DROME (Q5LJP9)

		
PDB
[Detailed view]
49 PDB

1AO0; 1CT9; 1EA0; 1ECB; 1ECC; 1ECF; 1ECG; 1ECJ; 1GPH; 1JXA; 1LLW; 1LLZ;
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