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PROSITE entry PS51273


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51273
Entry name [info] GATASE_TYPE_1
Accession [info] PS51273
Entry type [info] MATRIX
Date [info] 01-DEC-2006 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00405
Associated ProRule [info] PRU00605

Name and characterization of the entry

Description [info] Glutamine amidotransferase type 1 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=188;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=183;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3720946; R2=0.0188343; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=352; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=220; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-40; I=-40; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Post-processing [info]

COMPETES_HIT_WITH PS51130; PS51274; PS51275; PS51276

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 2'159 in 2'158 different sequences
Number of true positive hits 2'159 in 2'158 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.86 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] PS_Langendijk_Genevaux
Feature key [info] DOMAIN
Feature description [info] glutamine amidotransferase type-1
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
2158 sequences

ADCS_ARATH  (Q8LPN3), ADCS_ORYSJ  (Q5Z856), ADCS_SCHPO  (O94277), 
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UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CHYE_PENRW  (B6HLP3), GUAA2_BACTN (Q8A525), PYRG_UREPA  (Q9PQK7)

		
UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PURQ_LACCA  (P35851)

		
PDB
[Detailed view]
129 PDB

1A9X; 1BXR; 1C30; 1C3O; 1CE8; 1CS0; 1GPM; 1GPW; 1I1Q; 1I7Q; 1I7S; 1JDB;
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