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PROSITE entry PS51246


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51246
Entry name [info] CBIO
Accession [info] PS51246
Entry type [info] MATRIX
Date [info] 01-AUG-2006 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51237

Name and characterization of the entry

Description [info] Cobalt import ATP-binding protein cbiO.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=222;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=217;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9694562; R2=0.0094022; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=1063266; N_SCORE=9999.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=8725; N_SCORE=84.0; MODE=1; TEXT='?';
/CUT_OFF: LEVEL=-2; SCORE=482; N_SCORE=6.5; MODE=1; TEXT='??';
/DEFAULT: M0=-15; D=-60; I=-60; B1=-400; E1=-400; MI=-205; MD=-205; IM=-205; DM=-205;
...
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Post-processing [info]

PROMOTED_BY PS50893

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 207 in 207 different sequences
Number of true positive hits 206 in 206 different sequences
Number of 'unknown' hits 1
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.52 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
206 sequences

CBIO_SALPA  (Q5PDU4), CBIO_SALTI  (Q8Z5N5), CBIO_SALTY  (Q05596), 
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UniProtKB/Swiss-Prot
False negative sequences
1 sequence

CBIO_RHOCB  (O68106)

		
UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

Y583_METTM  (Q50801)

		
PDB
[Detailed view]
17 PDB

3GFO; 4HLU; 4HUQ; 4HZU; 4MKI; 4RFS; 4ZIR; 5D3M; 5JSZ; 6FNP; 6ZG3; 7NNT;
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