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PROSITE entry PS51195


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PURL: https://purl.expasy.org/prosite/signature/PS51195

Direct ScanProsite submission
General information about the entry

Entry name [info] Q_MOTIF
Accession [info] PS51195
Entry type [info] MATRIX
Date [info] 01-MAR-2006 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51195
Associated ProRule [info] PRU00552

Name and characterization of the entry

Description [info] DEAD-box RNA helicase Q motif profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=29;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=27;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3100777; R2=0.0079956; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2591.0996094; R2=0.9042146; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=900; H_SCORE=3405; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=650; H_SCORE=3179; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-17; D=-80; I=-80; B1=-400; E1=-400; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Post-processing [info]

PROMOTED_BY PS51192

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 1'183 in 1'182 different sequences
Number of true positive hits 1'183 in 1'182 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 22
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.17 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
1182 sequences

BOYB_DROME  (Q9VNP5), CGH1_CAEEL  (Q95YF3), CRHR_SYNY3  (Q55804), 
» more

UniProtKB/Swiss-Prot
False negative sequences
22 sequences

DBP3_ASPCL  (A1C5V3), DBP3_ASPNC  (A2QFL3), DBP3_ASPTN  (Q0CL13), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

RH1_CATRO   (P85441)

		
PDB
[Detailed view]
220 PDB

1FUU; 1HV8; 1QDE; 1QVA; 1S2M; 1T6N; 1VEC; 1XTI; 1XTJ; 1XTK; 2DB3; 2G9N;
» more