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PROSITE entry PS51188


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51188
Entry name [info] ZF_CR
Accession [info] PS51188
Entry type [info] MATRIX
Date [info] 01-APR-2006 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00553
Associated ProRule [info] PRU00546

Name and characterization of the entry

Description [info] Zinc finger CR-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=82;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=77;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6030025; R2=0.0057258; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=11065.9687500; R2=6.7566094; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1869; H_SCORE=23694; N_SCORE=13.3; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=681; H_SCORE=15667; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-18; D=-100; I=-100; B1=-1000; E1=-1000; MI=-250; MD=-250; IM=-250; DM=-250;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 669 in 669 different sequences
Number of true positive hits 669 in 669 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.82 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] S_Ohji
Feature key [info] ZN_FING
Feature description [info] CR-type
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
669 sequences

APJ1_YEAST  (P53940), DJA6_ORYSJ  (Q0JB88), DJA7A_ORYSJ (P0DO01), 
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UniProtKB/Swiss-Prot
False negative sequences
8 sequences

BSD2_ARATH  (Q9SN73), BSD2_MAIZE  (Q9XF14), LQY1_ARATH  (Q8GSJ6), 
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PDB
[Detailed view]
4 PDB

1EXK; 1NLT; 2CTT; 7ZHS