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PROSITE entry PS51178


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PURL: https://purl.expasy.org/prosite/signature/PS51178

Direct ScanProsite submission
General information about the entry

Entry name [info] PASTA
Accession [info] PS51178
Entry type [info] MATRIX
Date [info] 01-DEC-2005 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51178
Associated ProRule [info] PRU00528

Name and characterization of the entry

Description [info] PASTA domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=67;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=67;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1051230; R2=0.0064917; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=986; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=631; N_SCORE=6.2; MODE=1; TEXT='RR';
/DEFAULT: M0=-30; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 96 in 30 different sequences
Number of true positive hits 95 in 29 different sequences
Number of 'unknown' hits 1
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] PASTA
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
29 sequences

PBP2B_BACSU (Q07868), PBPX_STRPN  (P14677), PBPX_STRR6  (P59676), 
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UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

Y796_METKA  (Q8TX79)

		
PDB
[Detailed view]
23 PDB

1PMD; 1PYY; 1QME; 1QMF; 1RP5; 2KUD; 2KUE; 2KUF; 2KUI; 2Z2L; 2Z2M; 2ZC3;
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