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PROSITE entry PS51026


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51026
Entry name [info] NIFH_FRXC_3
Accession [info] PS51026
Entry type [info] MATRIX
Date [info] 01-OCT-2004 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00580

Name and characterization of the entry

Description [info] NIFH_FRXC family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=272;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=267;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9441956; R2=0.0118613; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=36920.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1523; H_SCORE=36920; N_SCORE=20.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=385; H_SCORE=36920; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-20; I=-20; B1=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 232 in 232 different sequences
Number of true positive hits 232 in 232 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
232 sequences

BCHL_BRASB  (A5EQ80), BCHL_BRASO  (A4YNP4), BCHL_CERS1  (A3PL19), 
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UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

BCHL_ACIRU  (Q9WXB7), NIFH_ENTAG  (P26249), NIFH_RHILE  (P20623)

		
PDB
[Detailed view]
57 PDB

1CP2; 1DE0; 1FP6; 1G1M; 1G20; 1G21; 1G5P; 1M1Y; 1M34; 1N2C; 1NIP; 1RW4;
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