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PROSITE entry PS51012


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PURL: https://purl.expasy.org/prosite/signature/PS51012

Direct ScanProsite submission
General information about the entry

Entry name [info] ABC_TM2
Accession [info] PS51012
Entry type [info] MATRIX
Date [info] 01-AUG-2004 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00692
Associated ProRule [info] PRU00442

Name and characterization of the entry

Description [info] ABC transporter integral membrane type-2 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=229;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=224;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=34.2108383; R2=0.0239656; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=-1114; N_SCORE=7.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-1156; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-24; D=-100; I=-100; B0=-1250; B1=-1500; E0=-1250; E1=-1500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 45 in 45 different sequences
Number of true positive hits 45 in 45 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 125
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 26.47 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] V_Lesaux
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
45 sequences

ABCGK_DICDI (Q8T674), BEXB1_HAEIF (P19390), BEXB2_HAEIF (P19391), 
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UniProtKB/Swiss-Prot
False negative sequences
125 sequences

AB10G_ARATH (Q9MAH4), AB11G_ARATH (Q8RXN0), AB12G_ARATH (Q9C8K2), 
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