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PROSITE entry PS51006


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51006
Entry name [info] PABS_2
Accession [info] PS51006
Entry type [info] MATRIX
Date [info] 01-JUL-2004 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC01033
Associated ProRule [info] PRU00354

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=236;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=231;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6503870; R2=0.0084546; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9512.6357422; R2=17.3427887; PRIORITY=1; TEXT='Heuristic 0.1%';
/CUT_OFF: LEVEL=0; SCORE=692; H_SCORE=21514; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=456; H_SCORE=17421; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-46; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 245 in 245 different sequences
Number of true positive hits 245 in 245 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] PABS
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
245 sequences

ACL5_ARATH  (Q9S7X6), PMT1_NICAT  (Q93XQ5), PMT1_TOBAC  (Q42963), 
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PDB
[Detailed view]
29 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2CMG; 2CMH; 2E5W; 2O05; 2O06; 2O07;
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