PROSITE logo

PROSITE entry PS51002


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51002
Entry name [info] CYTB_NTER
Accession [info] PS51002
Entry type [info] MATRIX
Date [info] 01-JUN-2004 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00171

Name and characterization of the entry

Description [info] Cytochrome b/b6 N-terminal region profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=212;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=207;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7864354; R2=0.0076402; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2271.0866699; R2=20.3581581; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=761; H_SCORE=17764; N_SCORE=8.6; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=487; H_SCORE=12186; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-30; I=-30; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 1'927 in 1'927 different sequences
Number of true positive hits 1'927 in 1'927 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
1927 sequences

ANI1_EMEND  (P03880), BI1_MYCMD   (Q0H8X2), CYB6_ACAM1  (B0C0E8), 
» more

PDB
[Detailed view]
178 PDB

1BCC; 1BE3; 1BGY; 1EZV; 1KB9; 1KYO; 1L0L; 1L0N; 1NTK; 1NTM; 1NTZ; 1NU1;
» more