PROSITE logo

PROSITE entry PS50970


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50970
Entry name [info] HCY
Accession [info] PS50970
Entry type [info] MATRIX
Date [info] 01-APR-2004 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50970
Associated ProRule [info] PRU00333

Name and characterization of the entry

Description [info] Homocysteine-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=296;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=291;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6990213; R2=0.0134143; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=731; N_SCORE=12.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=284; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 51 in 51 different sequences
Number of true positive hits 51 in 51 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] Hcy-binding
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
51 sequences

BHMT1_BOVIN (Q5I597), BHMT1_DANRE (Q32LQ4), BHMT1_HUMAN (Q93088), 
» more

PDB
[Detailed view]
9 PDB

1LT7; 1LT8; 1UMY; 4CCZ; 4M3P; 5DML; 5DMM; 5DMN; 8D45