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PROSITE entry PS50970


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PURL: https://purl.expasy.org/prosite/signature/PS50970

Direct ScanProsite submission
General information about the entry

Entry name [info] HCY
Accession [info] PS50970
Entry type [info] MATRIX
Date [info] 01-APR-2004 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50970
Associated ProRule [info] PRU00333

Name and characterization of the entry

Description [info] Homocysteine-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=296;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=291;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6990213; R2=0.0134143; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=731; N_SCORE=12.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=284; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 51 in 51 different sequences
Number of true positive hits 51 in 51 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] Hcy-binding
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
51 sequences

BHMT1_BOVIN (Q5I597), BHMT1_DANRE (Q32LQ4), BHMT1_HUMAN (Q93088), 
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PDB
[Detailed view]
9 PDB

1LT7; 1LT8; 1UMY; 4CCZ; 4M3P; 5DML; 5DMM; 5DMN; 8D45