PROSITE entry PS50943

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General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS50943
Entry name [info]	HTH_CROC1
Accession [info]	PS50943
Entry type [info]	MATRIX
Date [info]	01-NOV-2003 CREATED; 07-APR-2021 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC50943
Associated ProRule [info]	PRU00257

Name and characterization of the entry

Description [info]

Cro/C1-type HTH domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=64;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=64;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=7.7448611; R2=0.0001141; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=314460.8437500; R2=0.5538543; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=13630; H_SCORE=322010; N_SCORE=9.3; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-10910; H_SCORE=308418; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B0=*; B1=*; E0=*; E1=*; MM=*; II=*;

...

                A      C      D      E      F      G      H      I      K      L      M      N      P      Q      R      S      T      V      W      Y
/I:         B0=-8455; B1=-8455; BM=-5; BD=-8174;
/M: SY='I';  M= -4262, -7739,-10853,-10384, -2328,-10693, -9813,  2732, -4076,  2374,   302,-10387, -9950, -9339, -9958,-10083, -8224,   502, -8436, -8545; M0=-5986;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -720, -6772, -3405,  -716, -7090, -6281, -2493,  -710,  2841, -2076, -5862, -2350, -6374,   191,  2600, -1956, -3638, -1792, -1789, -1556; M0=-2192;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   673, -6777,  -109,  1829, -1624, -3204,  -688, -1165,   973, -1146, -1738,   411, -6372,  1187,   632,  -220,  -829, -1638, -6960,   110; M0=-881;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M=  1176, -1327, -2909,  -813,  -749, -4167, -2445,   869, -1084,  2046,   377, -6682, -7171,  -934,  -607, -1892, -2844,  -824,   157,  1064; M0=-1367;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M= -3759, -1064, -7976, -3851, -2179, -7198, -6041, -2587, -1889, -1886,  -661, -6815, -7245, -3080,  4104, -6287, -5603, -3444, -5951, -1956; M0=-3854;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -854, -2366,  -813,  1462, -7097, -3181, -1601, -1238,  2513,  -121,  -174,   575, -6372,   862,  -858, -2244,  -606,  -547, -6960, -6278; M0=-1354;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   870, -6778,  -559,  1520, -3417, -2255,   -38, -2072,  1579,  -649,  -408,  -215, -3621,  1157,   749,   416, -3481, -2595, -6961, -2215; M0=-973;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   467,  -640, -3502, -1452, -1589, -6284,  1290, -3870,  2067,   418,  -142,   706, -2034,   395,  2043, -2143, -2762, -3794, -6950, -1624; M0=-1429;
/I:         MM=-30; MI=-5617; MD=-14385; IM=-693; II=-1390; DM=-701; DD=-1378;
/M: SY='G';  M= -2586, -6780,   -48, -2588, -7101,  2912, -1058, -2915,  1381, -6796, -5869,  1610, -6374,  -873,  -739, -1278, -2814, -6402, -6963, -2060; M0=-2588;
/I:         MM=-6; MI=-13343; MD=-7995; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='M';  M= -5605, -2017, -3858, -7315,  -510, -3947, -6024,  1254, -1037,  2504,  2519, -6799, -7202, -6532, -2623, -6237, -5546, -1282,  2141,   144; M0=-3130;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-1520; DD=-618;
/M: SY='T';  M= -5847, -7349, -3509, -3338, -7669, -4112, -5412, -7427,  -951, -4645, -6456,  -650, -2184, -2971, -2721,  2230,  3280, -6974, -7517, -6818; M0=-3562;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-355; DD=-2197;
/M: SY='Q';  M= -2580, -5582, -7970, -7272, -5543, -7244, -6053,  -168, -1680,   756,   443, -6816, -2700,  4024,  -629, -3217, -5668, -1534, -6026, -5689; M0=-3286;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   354, -6778,   -51,  2040, -3417, -2233,  -881, -2039,  1167, -2164, -5867,  -839, -2753,  1260,   299,   384,   347, -1660, -6961, -1083; M0=-952;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=   251, -6778,  1247,  2719, -7099, -2606, -4937, -6850,  -153, -4549, -1600, -1939, -6372,  2398, -2175, -1633, -1691, -2971, -6961, -2167; M0=-2284;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M= -1353, -5921, -8475, -7844,   688, -7705, -6573,  -465, -7450,  2824,  1035, -7354, -7704, -7025, -3572, -6800, -2432,  1037, -6353, -3046; M0=-3896;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  3423, -1247, -9374, -2035, -9641,   -16, -8937, -9461, -9594, -9721, -8755, -8013, -8043, -3291, -9250,   256, -6822, -3230, -9867, -3152; M0=-5388;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M=    43, -6778,  1053,  2264, -2031, -1712,    61, -2489,  1630, -2642, -2712,  -541, -6372,  -391,   999, -1025,  -851, -3135, -6961, -3128; M0=-1286;
/I:         MM=-6; MI=-13343; MD=-7874; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=   481, -6745, -1718,   206, -2601, -1470, -2448,  -207,  2063,   521,   842, -1877, -6374,    81,  1686, -2216, -2779, -1386, -6936,  -197; M0=-1051;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-340; DD=-2251;
/M: SY='I';  M=   991,    11, -7967, -7331, -1833, -3882, -6042,  1848, -6926,  1716,   329, -6815, -7219, -6549, -6727,   797,   642,  -184, -5906, -5564; M0=-2869;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G';  M= -2965,   304,   191, -1170, -1629,  3225,   956, -6849, -2209, -4350, -5867,  1101, -6372, -1462, -2161, -1741, -3451, -6400, -6961,  -934; M0=-2469;
/I:         MM=-20; MI=-13343; MD=-6175; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='V';  M= -5589, -2131, -7935, -2168, -1485, -2452, -2569,  1945,  -832,   821,   989, -6783, -7187, -6516, -6694, -1333,  -683,  2610,  -240, -1527; M0=-2426;
/I:         MM=-22; MI=-6421; MD=-8152; IM=-776; II=-1265; DM=-157; DD=-3274;
/M: SY='S';  M=  -259, -6773,   338, -2660, -7095, -1076,   615, -6845,  -211, -6790, -2725,  -240,   -60,  -854, -1514,  2555,  1653, -3162, -6957, -6274; M0=-2078;
/I:         MM=0; MI=-13338; MD=-14380; IM=-894; II=-1115; DM=-376; DD=-2122;
/M: SY='R';  M=  -842, -6773, -2732, -1053, -1966, -2209,   140, -1890,  1277, -1700, -2627,  -830,   674,  2073,  2372, -2611, -1039,   194, -6958,  -345; M0=-1004;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M=   515, -6778, -3468, -1930, -7099,   -48, -2513, -3811,  -397, -3595, -1663,   421,  -262,  1935,  -525,  2177,   727, -1604, -6961, -3128; M0=-1384;
/I:         MM=-11; MI=-8131; MD=-7979; IM=-1509; II=-624; DM=-701; DD=-1378;
/M: SY='T';  M=   764, -6133, -5684, -2326, -1186, -1597, -1631, -3754, -2683, -1691,  1426,  -331, -6617,   408, -1214,   319,  2467,  -994, -6472,  2269; M0=-1484;
/I:         MM=0; MI=-13337; MD=-14379; IM=-894; II=-1115; DM=-353; DD=-2204;
/M: SY='I';  M= -3205, -7594,-10703,-10254, -3184,-10511, -9723,  2999,-10133,  1477, -1659,-10192, -9885, -9344, -9898, -9876, -8071,  1290, -8486,  1704; M0=-5966;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M=    20, -2277, -3419, -4845, -3533,  -123, -2477, -1347, -1338, -3113, -5552,   701, -6492,   571,  -469,  2919, -1100, -1918,  -299, -1007; M0=-1614;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M=  -382, -6778,  -151,  -400, -2474,  -648,   731, -6850,  1784, -1467,  -414,  1182, -6372,  1234,  1943,   216, -5244, -6400, -6961,  -578; M0=-1659;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='W';  M= -3032, -5520, -8039, -7406,  -661, -7245, -2533,  2464, -7002,   734,   448, -6887, -7290, -6617, -2837, -6331, -5638,  -369,  3802,  2799; M0=-3745;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='E';  M= -7021, -6806, -8976,  3827,  -985, -8543, -7211, -2171, -3732, -1221, -5380, -7950, -8469, -7265, -3580, -7739, -2928, -2361, -7273, -7022; M0=-4705;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N';  M= -1234, -2124, -3385, -1887, -7099, -3183,  -107, -3994,  1118, -1932, -5867,  2420, -6372,   497,  1884,  1049,   851, -2544, -6961, -3065; M0=-1733;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='G';  M= -1373, -2367,   304,   -96, -7129,  3291, -4963, -6880, -1860, -3436, -5898,  1064, -6396, -1688, -1644, -2257, -5273, -6430, -6991, -2209; M0=-2739;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M= -1395, -6778, -1296,   672, -7099, -2533,   -30,  -573,  1973,  -683,  -467,   218, -1649,   914,  1514,   -55,   -80, -1041, -6961,  -466; M0=-836;
/I:         MM=-83; MI=-13343; MD=-4168; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='R';  M=   368, -2299, -2027, -2239, -2526, -1538,   410,  -155,   -55, -2259,  -312,   460, -6309,  -185,  2117,   593,   963,  -351, -6836,  1202; M0=-850;
/I:         MM=-3734; MI=-13260; MD=-113; IM=-894; II=-1115; DM=-229; DD=-2771;
/M: SY='K';  M=   752, -3911,  -341, -1740, -4232,   250, -2073, -3982,  2254, -3927, -3001, -2050,  -735,  -128,  -392,  1578,    14,  -920, -4095, -3413; M0=-1132;
/I:         MM=-2; MI=-10281; MD=-11323; IM=-894; II=-1115; DM=-92; DD=-4023;
/M: SY='N';  M= -1218, -2131,     4,   733, -2300, -1767, -2181,  -256,   509, -1425, -1053,  2181, -2185,  -339,   276,   938,    33,  -388, -6881,   266; M0=-529;
/I:         MM=-6; MI=-8054; MD=-14307; IM=-1893; II=-453; DM=-50; DD=-4884;
/M: SY='P';  M=  -698, -5438, -3819, -3863, -1453, -2321, -6023,   936, -6896,  -460, -4641, -6791,  3657, -1515, -3434, -3252, -1819,   -28, -1909, -2053; M0=-2250;
/I:         MM=-5; MI=-13343; MD=-8172; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='S';  M= -1550, -6773,   728, -2269, -7094,  -583, -1431, -2965,    38, -4311, -2582,   713,  -959, -1385,  -212,  2519,  1490, -2862, -6957, -6274; M0=-1618;
/I:         MM=0; MI=-13338; MD=-14380; IM=-894; II=-1115; DM=-376; DD=-2122;
/M: SY='I';  M=   187, -6194, -1821, -1990,   -30, -1279, -1631,  1695, -1159,  1255,    33, -1623,   -76,    66, -2571,  -409,   -75,   654, -6522,  -247; M0=-580;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D';  M=  -192, -1971,  1851,  1729, -2043, -1518,  -673, -2039,   688, -1880, -5867,    -1,  -856,   644,  -661,   494,    58, -3072, -1968, -2068; M0=-735;
/I:         MM=-6; MI=-13343; MD=-7953; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='T';  M= -1149, -6675,  -735,  -889,  -777, -6303, -1038,  -253,   576,    80,   827,   747, -3619,  -650,  -674,  -539,  2245,   782, -6886,  -882; M0=-914;
/I:         MM=-34; MI=-6464; MD=-6360; IM=-56; II=-4725; DM=-350; DD=-2216;
/M: SY='L';  M=   890,  -784, -3866, -3988,  -839, -7139, -6011,  1252, -3965,  2571,   598, -6785, -7189, -3485, -6696, -2599, -5532,   -22,  -678, -5534; M0=-2810;
/I:         MM=-6; MI=-13325; MD=-7922; IM=-894; II=-1115; DM=-570; DD=-1615;
/M: SY='I';  M=   -21, -1371, -1288,   786,    53, -2213, -1647,  1287,  1148,   -27,   352, -1343, -3679,   868,  -488,  -615, -2717,   413,   864,   170; M0=-472;
/I:         MM=0; MI=-13332; MD=-14374; IM=-894; II=-1115; DM=-240; DD=-2708;
/M: SY='K';  M=   103, -6778, -1025,   149, -3287, -4012, -2534,  -909,  2736,  -581, -1211,  -642, -2246,   722,  1122,  -432,  -724, -3167, -6961, -6278; M0=-1210;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='I';  M= -3079, -1906, -8092, -7460, -1129, -7304, -6182,  2675, -3675,  2300,   574, -6950, -7345, -6680, -6861, -6392, -2795,    25, -6035,  -277; M0=-3691;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  2858,  1918, -3676,  -338, -3262, -2668, -2422, -1506, -3780,  -890,   -40, -6339, -7056, -3250, -2239,  1086, -2001, -1048, -6003, -2898; M0=-1887;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='K';  M=  -168, -6778,  1306,  1163, -7099, -1254,   439, -2010,  1793, -3012, -1715,   894, -6372,   879,   769,   -51,  -845, -2498, -6961, -2909; M0=-1275;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='A';  M=  2155,  -355, -7567, -2169,   239, -1346, -1751,   792, -1098,   310, -4682, -2500, -3585, -3332, -1835, -1974, -1099,  1351, -5933,  1146; M0=-1278;
/I:         MM=0; MI=-13343; MD=-14385; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='L';  M= -6799,  -231, -9087, -8493,  2526, -8373, -2716,  -858, -8107,  2640, -1050, -7971, -3527, -7572, -7852, -7484, -1834, -5771, -6529,  1656; M0=-4672;
/I:         MM=-12; MI=-13343; MD=-6955; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='N';  M= -3173, -6770,  1537,   774, -7091,  2151,  -290, -6842,    66, -6786, -5859,  2286, -2137,   675,  -970, -2915, -2737, -3991, -6953, -6270; M0=-2474;
/I:         MM=0; MI=-13331; MD=-14373; IM=-894; II=-1115; DM=-233; DD=-2746;
/M: SY='V';  M= -1350,  1416, -7891, -2165, -1415, -2589, -2301,  1128,  -360,  -347,  -405, -3560, -7198, -3259, -2217, -1406,   522,  2887, -5899, -2106; M0=-1704;
/I:         MM=-4163; MI=-13343; MD=-83; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='P';  M= -1585,  1454, -1431,  1141, -3373,  -268, -1211, -3121,   447, -3065, -2141, -1192,  2228,  1631,   393,   700, -1523, -2674, -3231, -2553; M0=-963;
/I:         MM=-3022; MI=-9183; MD=-192; IM=-894; II=-1115; DM=-8250; DD=-5;
/M: SY='L';  M= -1554, -1348, -2774, -2539,  -219, -2634, -1805,   381, -2112,  2717,   678, -2400, -2702, -1930, -2051, -2210, -1566,   -12, -1413, -1056; M0=-1239;
/I:         MM=-1355; MI=-6191; MD=-748; IM=-894; II=-1115; DM=-7235; DD=-10;
/M: SY='I';  M= -1021,  -808, -2647, -2378,  -596, -2476, -1863,  3052, -2051,   326,   342, -2189, -2595, -1954, -2080, -1887, -1057,  1184, -1704, -1268; M0=-1120;
/I:         MM=-33; MI=-6055; MD=-7097; IM=-894; II=-1115; DM=-7244; DD=-10;
/M: SY='K';  M=  -674, -1558,  -775,  -327, -2177, -1504,  -329, -1720,  2263, -1820, -1071,  -467, -1734,    47,   243,  -679,  2081, -1391, -2029, -1588; M0=-686;
/I:         MM=-667; MI=-6680; MD=-1473; IM=-894; II=-1115; DM=-6080; DD=-21;
/M: SY='I';  M= -2559, -2119, -4896, -4346,  2377, -4455, -3103,  2654, -4066,  1597,   265, -4076, -4003, -3258, -3745, -3673, -2460,  -448, -2227, -1976; M0=-2208;
/I:         MM=-12; MI=-7543; MD=-8585; IM=-894; II=-1115; DM=-6582; DD=-15;
/M: SY='W';  M=  -868, -2196,  -766,  1165, -2469, -1855,  -509, -2177,  1187, -2185, -1301,  -514,   859,  1776,  -553,  -775,  -805,   645,  2748, -1764; M0=-618;
/I:         MM=-8; MI=-8029; MD=-9071; IM=-894; II=-1115; DM=-5724; DD=-28;
/M: SY='F';  M= -1361, -1528,   474, -1846,  2796, -2704, -1490,   636,   495, -1396,  -718, -1860, -2773, -1495, -1883,   178,   755,   769, -1952, -1554; M0=-752;
/I:         MM=-5; MI=-8649; MD=-9692; IM=-894; II=-1115; DM=-41; DD=-5152;
/M: SY='S';  M= -1470, -6740,  1226,   373, -7061, -6240,  -886, -3659,  -491, -2371, -5829,  -760,  1284, -1279,  -623,  2142,  1596, -6362, -6923, -6240; M0=-1979;
/I:         MM=0; MI=-13303; MD=-14345; IM=-894; II=-1115; DM=-96; DD=-3955;
/M: SY='I';  M=  -392, -5459, -3847, -1348,  -149, -4083, -1013,  1839, -1976,   974,   740, -6688,  1183, -2221, -2403, -1337,   619,  1144,  -251,  -740; M0=-1095;
/I:         MM=0; MI=-13335; MD=-14377; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='D';  M=   629, -1963,  2508,   899, -7092,  -743, -1666, -2006,  -427, -3034, -5860,   340,  -832,  -682, -1687,   665,    45,  -710, -6954, -3167; M0=-1059;
/I:         MM=0; MI=-13332; MD=-14375; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='Y';  M=  -829, -6738,  1471,  1635,   -13, -1928, -1085,  -975, -1150,  -911, -2421, -1564, -2620,  -312, -1974,  -846,  -730, -1119,  2080,  2722; M0=-796;
/I:         MM=-6041; MI=-13308; MD=-22; IM=-894; II=-1115; DM=-701; DD=-1378;
/M: SY='F';  M= -1294, -2730,  2199,  1950,  2308, -1686,  -754, -2671,  -723, -2675, -1924,  -318, -2055,  -414, -1352, -1098, -1295, -2298, -2768, -1933; M0=-1036;
/I:         MM=-73; MI=-4909; MD=-5951; IM=-894; II=-1115; DM=-3; DD=-8953;
/M: SY='L';  M= -2582, -1979, -7903, -7267,  2042, -7105, -2436,   941, -3910,  2642, -2341, -3429, -7155, -1777, -2689, -2217, -5498,  -292,   -17, -2927; M0=-2859;
/I:         E0=-1000; E1=-1000;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.

Total number of hits	266 in 266 different sequences
Number of true positive hits	261 in 261 different sequences
Number of 'unknown' hits	0
Number of false positive hits	5 in 5 different sequences
Number of false negative sequences	7
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	98.12 %
Recall (true positives / (true positives + false negatives))	97.39 %

Comments [info]

Taxonomic range [info]	Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	1
Matrix type [info]	protein_domain
Scaling database [info]	window20
Author [info]	PS_Langendijk_Genevaux
Feature key [info]	DOMAIN
Feature description [info]	HTH cro/C1-type
Version [info]	9

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	261 sequences ANSR_BACSU (Q07683), BCRR_ENTFL (Q5WNW9), CEBA_BACAM (P23939), » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	7 sequences HEPD_STRVT (Q5IW40), HICB2_PHOLL (Q7MZD8), HIGA2_VIBCH (Q9KMA5), » more
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence NADR_KLEPN (P47981)
UniProtKB/Swiss-Prot False positive sequences	5 sequences CYNS_AQUAE (O66587), CYNS_MEDTR (B7FKW7), CYNS_PHANO (Q0UBT2), » more
PDB [Detailed view]	103 PDB 1ADR; 1B0N; 1LLI; 1LMB; 1LRP; 1PER; 1PRA; 1R63; 1R69; 1RIO; 1RPE; 1SQ8; » more