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PROSITE entry PS50937


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50937
Entry name [info] HTH_MERR_2
Accession [info] PS50937
Entry type [info] MATRIX
Date [info] 01-OCT-2003 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00477
Associated ProRule [info] PRU00254

Name and characterization of the entry

Description [info] MerR-type HTH domain profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=71;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=71;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6280272; R2=0.0003213; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=319344.7187500; R2=2.5783896; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=19832; H_SCORE=370479; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=12051; H_SCORE=350417; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;

...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 81 in 81 different sequences
Number of true positive hits 81 in 81 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Feature key [info] DOMAIN
Feature description [info] HTH merR-type
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 81 sequences 

ADHR_BACSU  (O06008), BLTR_BACSU  (P39842), BLUR_ECOLI  (P75989),
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PDB
[Detailed view]		 44 PDB

1EXI; 1EXJ; 1JBG; 1Q05; 1Q06; 1Q07; 1Q08; 1Q09; 1Q0A; 1R8D; 1R8E; 2VZ4;
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