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PROSITE entry PS50934


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PURL: https://purl.expasy.org/prosite/signature/PS50934

Direct ScanProsite submission
General information about the entry

Entry name [info] SWIRM
Accession [info] PS50934
Entry type [info] MATRIX
Date [info] 01-OCT-2003 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50934
Associated ProRule [info] PRU00247

Name and characterization of the entry

Description [info] SWIRM domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=98;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=93;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.3653004; R2=0.0215334; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=239; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=146; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-200; E1=-200; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 56 in 56 different sequences
Number of true positive hits 56 in 56 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.25 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SWIRM
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
56 sequences

ADA2_CANAL  (Q59WH0), ADA2_SCHPO  (Q9P7J7), ADA2_YEAST  (Q02336), 
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UniProtKB/Swiss-Prot
False negative sequences
1 sequence

TADA2_ORYSJ (Q75LL6)

		
PDB
[Detailed view]
162 PDB

2AQE; 2AQF; 2COM; 2CUJ; 2DCE; 2DW4; 2EJR; 2ELJ; 2FQ3; 2H94; 2HKO; 2IW5;
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