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PROSITE entry PS50932


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50932
Entry name [info] HTH_LACI_2
Accession [info] PS50932
Entry type [info] MATRIX
Date [info] 01-OCT-2003 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00366
Associated ProRule [info] PRU00111

Name and characterization of the entry

Description [info] LacI-type HTH domain profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=55;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=55;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.7506578; R2=0.0002871; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=235258.1406250; R2=1.8431582; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=33959; H_SCORE=297850; N_SCORE=12.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=13060; H_SCORE=259330; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B1=*; E1=*; MM=*; II=*;

...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 183 in 183 different sequences
Number of true positive hits 183 in 183 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Feature key [info] DOMAIN
Feature description [info] HTH lacI-type
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 183 sequences 

AGLR_RHIME  (Q9Z3R4), ASCG_ECOLI  (P24242), CCPA_BACSU  (P25144),
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PDB
[Detailed view]		 61 PDB

1BDH; 1BDI; 1CJG; 1EFA; 1JFS; 1JFT; 1JH9; 1JWL; 1JYE; 1JYF; 1L1M; 1LBG;
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