PROSITE entry PS50930
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS50930 |
| Entry name [info] | HTH_LYTTR |
| Accession [info] | PS50930 |
| Entry type [info] | MATRIX |
| Date [info] |
01-OCT-2003 CREATED;
07-APR-2021 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50930 |
| Associated ProRule [info] | PRU00112 |
Name and characterization of the entry
| Description [info] | LytTR-type HTH domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=112; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=112; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8881738; R2=0.0002640; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=592359.8750000; R2=1.7600396; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=23151; H_SCORE=633107; N_SCORE=9.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=13682; H_SCORE=616441; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: B1=*; E1=*; MM=*; II=*; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=-8455; E0=*; BM=-49; BD=-4907; /M: SY='I'; M= -147,-3069,-5651,-5025, 2165,-4910,-3769, 2654,-4642, 1498, 834, -259,-4858,-4168,-4415,-4016,-3230,-2184,-3463,-3201; M0=-2387; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= 420,-3573, -364, 398,-3842,-1190,-1888, -656, -316,-1296,-2676, 739, 1841,-1447,-1989, 652, 716, -169, 1329, 75; M0=-484; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M= 184, 1076,-4802,-4166, 1157, -190,-2877, 1302,-3762, 1015,-1488,-3651,-4056,-3385, -638, -955,-2399, 1625,-2743, 1394; M0=-1230; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= -749,-3684,-2068, 753, -446,-3193,-1852,-1225, 2186,-3699,-2774, 716, -593, 216, 1145, 342, 306,-1280,-3869, -91; M0=-832; /I: MM=-50; MI=-10019; MD=-4908; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M=-2248,-3050, 425,-1916,-3158, -820,-2060, 1810, 1842, -537,-2200,-2153, -572,-1735, -310, 73, 603, 70,-3376, 119; M0=-646; /I: MM=-3277; MI=-9970; MD=-159; IM=-894; II=-1115; DM=-384; DD=-2098; /M: SY='L'; M=-1953,-1581,-4240,-3771, -838,-3836,-2963, 604,-3475, 2338, 294,-3524,-3602,-2974,-3323,-3092,-1913, 2172,-2289,-2112; M0=-1863; /I: MM=-15; MI=-7119; MD=-8161; IM=-894; II=-1115; DM=-31; DD=-5553; /M: SY='G'; M= -749,-3691, 1620, 796,-4012, 1672, 722,-3763, 883,-1327,-2780, 622,-3285, 217, 53, -706,-2157,-3313,-3874, -3; M0=-931; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= -694,-3690, 333, 1197, -326, 859, 628, -636, 1188,-3706,-2779, -134,-3285,-1390, 1129, 794, 16,-3312,-3874,-3191; M0=-814; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= 444,-3691,-2066, -379,-4012, 613,-1851,-3762, 397, -588,-2780, 1138,-3286, 1559, 1634, 927, -375,-3313,-3874,-3192; M0=-923; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-2438,-2358, 285,-3663, -357, -823,-2763, 1918,-3362, -829, 684,-3387, 859, -154, 372, -53, 218, 1337,-2806, -116; M0=-766; /I: MM=-51; MI=-10019; MD=-4897; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-2415, 1016,-4710, 306, 2102,-3957, 1462, 1123, -748, -152,-1451,-3586, -592,-3316,-3501,-3039,-2355, 760,-2705, 2662; M0=-1336; /I: MM=-2; MI=-9970; MD=-11012; IM=-894; II=-1115; DM=-382; DD=-2102; /M: SY='L'; M=-2446,-2326,-4472,-3856, 1,-3957,-2810, 322, 1098, 1390, 656,-3493, 427, -168, -490, 611, 202, 492,-2779, 199; M0=-920; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M= -832,-2297,-4817,-4182, 650,-4021,-2893, 1944,-3777, 1087, 699,-3667,-4070, -293,-3577,-3106, -105, 2069,-2757, 231; M0=-1616; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= 396,-3692, 1434, 782,-4014,-3192,-1851,-3764, 379,-1393,-2782, 1130, 1835, 907, 428, -50,-2158,-3314,-3876,-3193; M0=-1014; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M= -735,-2297,-4698,-4069, -25,-1050,-2857, 2213, -987, 108, 785,-3603, 955, -285, -624,-3071, 1146, -24,-2753, 1074; M0=-958; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= 793,-3691, 1725, -9,-4012, -152, 1308,-3763, 1219,-3707,-2780, 817,-1512, 95, 400, 458, -473,-3313,-3874,-3191; M0=-986; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= -783,-3936, 3003, 1690,-4251,-3335,-2050,-4008, 662,-3949,-3032, 591,-3468, -638, -344, -584,-2387,-3556,-4116,-3419; M0=-1698; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-1815,-3820,-7033,-6717,-4410,-6894,-6936, 3353,-6695, 608,-3096,-6551,-6600,-6618,-6859,-6282,-4329, 1871,-6214,-5736; M0=-4113; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M= -713,-2320, -719, -821, 739,-3964, 509, 1731,-3554, 1639, 727,-3517,-4017, -326,-3451,-3036, -404,-1736,-2773, 2111; M0=-1226; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M= -61,-2303,-4664,-4037, 2155,-1038,-2850,-1798,-3662,-1061, 443,-3588,-4039,-3311, 250, -74, 310,-1717, 2387, 3266; M0=-1450; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M= 604,-3704,-6668,-6197, 2098,-6237,-5474, 1921,-5983, 1298,-2479,-5893,-6025,-5597,-5882,-5467,-4086, 1924,-4949,-4675; M0=-3218; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= -694,-3639,-2093, 2574,-3937, -155, 627, -361,-1456,-3645,-2735,-1850,-3298, 1711, -342, 737,-2162, -874,-3837, -87; M0=-1106; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M= 1897, 1089,-4737,-4130,-2382, -976,-2958, -404,-3758,-2275, 639,-3651, -575,-3406,-3608, 1153, 2075, 216,-2879,-2535; M0=-1442; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M= -2, 927, 686, 695, -391,-3195, 2584, -894,-1437,-3689,-2767, 493,-3288, 1295, -224, 1295, -456, -866,-3863,-3184; M0=-866; /I: MM=-1633; MI=-10019; MD=-564; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M=-1360,-2659,-1139, -730,-3208, 431,-1066,-2937, 2395,-2896,-2006, 947, 1818, -630,-1034,-1272, 817,-2470,-3061,-2427; M0=-992; /I: MM=-6; MI=-8392; MD=-9434; IM=-894; II=-1115; DM=-4541; DD=-63; /M: SY='T'; M=-1175,-2062,-1338, 548,-2210,-2246, -899,-1828, 933, 1075,-1205,-1006,-2326, -544, 970,-1195, 1673, 505,-2350,-1824; M0=-578; /I: MM=-1030; MI=-8392; MD=-979; IM=-894; II=-1115; DM=-4541; DD=-63; /M: SY='H'; M=-2096,-2902,-2547,-1398,-3643,-2700, 3131,-3043, 2180,-2732,-2032,-1362,-2656, -251, 2687,-1973,-1818,-2789,-2602,-2434; M0=-1646; /I: MM=-13; MI=-7375; MD=-8417; IM=-894; II=-1115; DM=-32; DD=-5512; /M: SY='D'; M= 833,-3697, 1502, 1236,-4018, 533, 1047,-3769,-1437,-3713, 536, 1045, 1001,-1396, -163, 59,-2163,-3319,-3881,-3197; M0=-1037; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M=-2636,-4106, -353,-1814,-4443, 1033, 3869,-4185, 1134,-4109,-3208, 1256,-3631,-1740, 979, 66,-2575,-3740,-4257,-3589; M0=-1755; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-2272,-3233,-2379,-1826, -315, -855, 522, -710, 1464,-3173, 951, -273,-3430,-1662, 1222, -251, -379,-2759,-3529, 3271; M0=-1100; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M=-1045,-3648,-6732,-6343,-4197,-6406,-6002, 1416,-6211, 878,-2989,-6068,-6231,-6055,-6258,-5693, 1612, 2789,-5582,-5134; M0=-3439; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-2296,-3044,-2563, 264, 889,-3423,-2128, 1426,-1894, -460,-2198, 1085,-3506, 1231, 1557, -906, 911,-2541,-3380, 1014; M0=-898; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M= 830,-3432,-6287,-5773,-3472,-5741,-4864, 2116,-5499, 1943,-2418,-5393,-5633,-5150,-5380,-4920,-3750, 1605,-4522, 165; M0=-2943; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M=-2358, 697,-3106, -727, 669,-3627, 3189, 841, -624,-2572,-1872, -496,-3700,-2260, 1054, -741, 779, 212,-3091, 1752; M0=-1019; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M= -300,-2969, -508,-2165,-3058, -933, 1034,-2656,-2053, 533,-2149, -255,-3583,-1964,-2453, -692, 2979, 141,-3342,-2856; M0=-1074; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= 178,-3689, 461, 1125, -496, -89, 722,-1094, 1843,-3705,-2779, -134,-3285,-1390, 705, -29, 246, -888,-3873,-3191; M0=-713; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='N'; M=-1410,-3694, 1569, 834,-4015, 470, 585,-3766, -216,-3710,-2783, 2104,-3287, -547, 1414, 278, -423,-3316,-3877,-3194; M0=-1180; /I: MM=-2536; MI=-10019; MD=-275; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M=-1963,-2645,-1735,-1716,-3931, 3120,-1850,-3748, 1942,-3670,-2973,-1788,-2900,-1546,-1219,-2003,-2127,-3188,-3479,-3280; M0=-1867; /I: MM=-12; MI=-7494; MD=-8537; IM=-894; II=-1115; DM=-32; DD=-5489; /M: SY='H'; M= 10,-3691, -314, 1258, -371, 1380, 2011,-3763, 722,-3707,-2780, 4,-3285, 1640, 472,-2098, -407,-3313,-3874,-3191; M0=-1072; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M= -739,-3689, 911, 990,-4010,-3192, 438, -780, 359,-3705,-2779,-1827,-3285, 1939, -247, 1246, 782, 300,-3873,-3191; M0=-990; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M= -302, 1151, -779,-3997, 1564, -903,-2842, 428, -753, -178,-1508,-3567,-4032, -282, 340,-3057,-2392, 531, 1340, 2992; M0=-997; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-2277,-3173, -695, 1901, 1188,-3364,-2057, -654, -424, 1459,-2316, -102, -493,-1705,-2219, 13, -555, -351,-3482,-2939; M0=-755; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='C'; M=-2459, 2457,-4804, -969, 2293,-4006, 567, 1247,-3763, 396, 1833,-3652,-4056,-3386,-3563,-3091, 330, 1113,-2743, 270; M0=-1543; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M= -749,-3686, 579, -259,-4005,-3192, 658,-3754, 375, 3, 387, -52, 1584,-1392, 1048, -740, 785,-3307,-3871, 1784; M0=-797; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='M'; M= -10,-3285, -512, 456,-3446, 2050,-2020,-3094,-1701, 948, 2473,-2063,-3422, 152,-2166, -667,-2216,-2819, 1287,-3003; M0=-1039; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='N'; M=-3007,-4254,-2966,-2390,-4839,-3875,-2480,-4504, -257,-4389,-3528, 2089, 1110,-2040, 1864, 1222, 2020,-4070,-4469,-3948; M0=-1973; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-5747,-5077,-8113,-7505, -143,-7989,-6512, 1435,-7325, 2882, 2195,-7734,-6810,-5920,-6716,-7425,-5557,-3403,-4872,-5153; M0=-4730; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='N'; M= 429,-3690, -358, -279,-4010, -930,-1850,-3761, 1043,-3706,-2779, 1881,-3285,-1391, -223, 1156, 969, -986,-3873, 1421; M0=-973; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 1155,-3691, 1533, 2033,-4012,-3191,-1850,-3762, -232,-3707,-2780, -36,-3285, 805, 409, -871, -397, -986,-3874, 107; M0=-1136; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -97,-2455,-4999,-4371, 879,-4218,-3100, 1274,-3974, 2168,-1605,-3864,-4255,-3593,-3776,-3308, -452, 1421,-2948, 116; M0=-1841; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= -764, 1326, -421, 2745, -269,-3302,-1981, -710, -193, -542,-2461,-2015,-3390, 84,-2114, -57, 266, -838,-3607,-3022; M0=-876; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= 421,-3712, -5, 1300,-4033, -926,-1867,-3784, 2482,-3728,-2802, 1104,-3301, 149,-1959, 287, -470,-3334,-3895,-3211; M0=-1286; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M=-2275,-3731, -309, 1204,-4055,-3245,-1891,-3798, 2501, -562, 391,-1882,-3336, 1718, 1330,-2157,-2212, -899,-3906,-3236; M0=-1324; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-2473, 1104, 256, -846, 997,-4015,-2880, -171,-3739, 2447,-1501,-3643,-4065,-3371,-3558,-3098, -414,-1717,-2758, 1706; M0=-1569; /I: MM=-585; MI=-4806; MD=-1749; IM=-157; II=-3278; DM=-701; DD=-1378; /M: SY='P'; M= -286,-3293, 837, 55,-3613, 546, 1063,-3364, 832,-3308,-2382, 1016, 2298, -991,-1541,-1699, -105,-2914,-3476, 518; M0=-930; /I: MM=-340; MI=-9510; MD=-2263; IM=-894; II=-1115; DM=-2336; DD=-319; /M: SY='P'; M=-1685,-3159, 974, -960,-3481, 1062,-1314,-3233, -904,-3178,-2255, 462, 2118, 680, 355, 675, 710,-2783,-3346,-2661; M0=-926; /I: MM=-3; MI=-9269; MD=-10311; IM=-894; II=-1115; DM=-190; DD=-3016; /M: SY='P'; M= 377,-3564, 740, 337, 646,-3168,-1831, 100, -204,-3565,-2663,-1818, 1539, 856,-1927, 718, 766, -822,-3770, 158; M0=-677; /I: MM=-2; MI=-9964; MD=-11006; IM=-894; II=-1115; DM=-364; DD=-2166; /M: SY='H'; M= -24,-3690, -441, 282,-4011, 480, 1709,-3761,-1430,-3706, 226, 1148, -461, 590, 1460, 49, 340, -832,-3873, 789; M0=-730; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M=-5323,-4804,-7508,-7077, 3904, 480,-5125, -365,-6807, 1283,-1977,-6647,-6501,-5692,-6323,-6374,-5214,-3332,-4114,-3524; M0=-3923; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M= -69,-2360,-4887,-4253, 2763,-4095,-2968, 1505,-3850, 1159, 812,-3741,-4138,-3469,-3650,-3181, -682, 952,-2824, 185; M0=-1760; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= -861,-4879,-5131,-4010,-5987,-4869,-3196,-5389,-1859,-1290,-4453,-3859,-4996, 2299, 3647, -956,-4108,-5051,-5052,-4925; M0=-2963; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='C'; M=-3821, 4284,-6378,-5917,-3866,-5883,-5197, 2112,-5690, -960,-2780,-5551, -560,-5456,-5644,-5096, 190, 1962,-4921,-4510; M0=-3202; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M=-4385,-6130, 292,-2510,-6691, -716, 4894,-6696,-4217,-6551,-5973, -405,-4842,-3477,-5211, 1185,-4541,-6046,-6744,-5641; M0=-3678; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-4943,-5488,-6020,-4238,-6486,-5365,-3115,-5678, 1505,-5260,-4623, -308,-5258, -131, 3768,-4806, -703,-5487,-5053,-5036; M0=-3646; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='S'; M=-1014,-3766,-4436,-4513,-6094, -672,-4715,-5904,-4833,-6064,-5134, 1346,-4627, -86,-5053, 3295, -487,-4788,-6220,-5905; M0=-3175; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M= -436, 2360,-4722, -89, 1883,-3995, 1467,-1788,-3704, -87, 725,-3614,-4045,-3342, -501, -365,-2396, -381, 2247, 2715; M0=-1324; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='W'; M=-4388, 1471,-6875,-6356,-3293,-6421,-5471, 2413,-6113, 2271,-2133,-6086,-6092,-5514,-5902,-5645,-4323, 302, 2908,-4609; M0=-3682; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M= -91,-3788,-7005,-6696,-4516,-6863,-6968, 2138,-6680,-1126,-3193,-6522,-6594,-6662,-6872,-6251,-4297, 3254,-6316,-5773; M0=-4124; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='N'; M= 965,-5411, 627,-2733,-6676,-4191,-3958,-6647,-4427,-6572,-5932, 3953, -379,-3676,-5353,-3940,-4362,-5830,-6755,-5777; M0=-3653; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-2553,-2873, -629,-2728,-2904,-3796,-2493, 1637, 208, 2050,-2051,-2811, -499,-2355, 1100,-2807, 817,-2328,-3252,-2842; M0=-1261; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= 469,-3690, 1661, 691, -612, -40, 1514, -807, 818,-3707,-2780, 963,-3284, 125, -336, -163, -467,-3312,-3874, -92; M0=-735; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M= -89, 1818, -399,-1525,-3997,-3197, 2371,-3743, 1628,-3694,-2771, 1722,-3290,-1397, 1124, 41,-2160,-3300, 1262, 1305; M0=-1312; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-1053,-3787,-6927,-6562, -242,-6695,-6397, 3210,-6474, 211,-2916,-6349,-6429,-6280,-6538,-6025,-4260, 2097,-5772,-5379; M0=-3769; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= -68,-3691, -589, 1684,-4011,-3195,-1853,-1013, 1453,-3706,-2780,-1831,-3288, 894, 2130, -736,-2160, 531,-3874,-3193; M0=-1192; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-2232,-3705, -403, 2158,-4027, -66, 1486,-3777, 386,-1393,-2795, -52,-3296,-1403, 1476, 1323,-2171,-3328,-3888,-3205; M0=-1184; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-1037,-3266,-6014,-5453, -454,-5382,-4379, 2900,-5131, 1416,-2164,-5030,-5308,-4738,-4966,-4526,-3523, 1639,-4074, -217; M0=-2757; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= -735,-3680, 2091, 1377,-3997,-3194,-1853, -702, 828,-1469, 440,-1831, -961, 1443, 1307,-2101,-2158, -940,-3867,-3187; M0=-953; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-2219,-3679, -689, -210, 1818, -931,-1854,-3741, 864, -37,-2769,-1832, 1171, 94, 1914, -644, -473,-3298,-3865, 608; M0=-783; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='W'; M= 289,-3691, 1602, 328,-4011, -902,-1855,-3760, 1834,-1326,-2781,-1831,-3289, 1269,-1943,-2103, 909,-3313, 3051,-3194; M0=-1172; /I: MM=-52; MI=-10019; MD=-4850; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= -745,-3656, 971, 1142, 1421, 1204,-1818,-3725, 788,-1727,-2745, -76, 1428,-1359,-1908, -14,-2125,-3277,-3840,-3157; M0=-860; /I: MM=-447; MI=-9968; MD=-1915; IM=-894; II=-1115; DM=-1444; DD=-661; /M: SY='N'; M= -314,-3313, 803,-1159,-3624, 275, 1971,-3367,-1091, 183,-2409, 2686,-2930,-1046, 826, -220,-1807,-2931,-3506,-2828; M0=-960; /I: MM=-303; MI=-9525; MD=-2410; IM=-894; II=-1115; DM=-3448; DD=-139; /M: SY='G'; M=-1972,-2537,-2780,-2369,-3046, 2703,-2371, -329,-2303,-2927,-2186, 1710,-3361,-2172,-2639, 730, 337,-2394,-3361, 761; M0=-1376; /I: MM=-301; MI=-2414; MD=-10267; IM=-58; II=-4667; DM=-174; DD=-3141; /M: SY='R'; M=-1008, 1042, -257, -236,-3960,-3151, 1088, -768, 1447, -24, 477, -133,-3244, 237, 2041, -629, 643,-3262,-3827,-3146; M0=-810; /I: MM=-2; MI=-9968; MD=-11010; IM=-894; II=-1115; DM=-377; DD=-2121; /M: SY='Y'; M= 1061, 1084,-4798, 758, 2123,-4005,-2876, 921,-3759, 244,-1488,-3649,-4055,-3383,-3561,-1093,-2399, -444, 1356, 2171; M0=-1387; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-2235,-3519,-2162, 1626,-3767,-3240, 588, 461, -152, 848, 421, -233,-3331, 443, 1287, -148, -514, -815,-3748, 120; M0=-723; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -25,-2286,-4803,-4167, 844,-1422,-2878, 429,-3763, 2111, 622,-3652,-4057, -77,-3563,-3091, -730, 1104,-2743, 961; M0=-1422; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M=-2399,-2511, -644,-3010, 2116,-3771, 1533, 1735, -616, 186, 1334,-2980,-3836, -545, 711, -703, -418,-1944,-2938, 1222; M0=-983; /I: MM=-52; MI=-10019; MD=-4850; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-2378,-2376, 21,-3313, 0, -83,-2634, -529, 277, 2182, 623,-3161, -468,-2829,-3143, 363, -480,-1801,-2815, 212; M0=-878; /I: MM=-372; MI=-9968; MD=-2144; IM=-894; II=-1115; DM=-1444; DD=-661; /M: SY='K'; M=-1878,-3350, 774, 99, -24,-2852,-1511,-3420, 2441,-3366,-2439, 212, -217,-1051, 1101, 449, -164, -602,-3533,-2851; M0=-943; /I: MM=-1921; MI=-9599; MD=-445; IM=-894; II=-1115; DM=-3279; DD=-157; /M: SY='K'; M= -718,-1998, 941, -61, 856, 1136, -391,-1967, 1463,-2003,-1134, -358,-1798, 36, -513, -635, 1157,-1597,-2246,-1606; M0=-471; /I: MM=-329; MI=-7689; MD=-2328; IM=-894; II=-1115; DM=-3007; DD=-192; /M: SY='L'; M= 795,-1202,-2697, 962,-1084,-2702,-1574, 1452,-1943, 1868, -202,-2048,-2746,-1716,-2031,-1776,-1186, -209,-1723,-1376; M0=-847; /I: MM=-9; MI=-7926; MD=-8969; IM=-894; II=-1115; DM=-108; DD=-3798; /M: SY='N'; M=-2178,-3651, 1874, 384,-3971, 1025,-1810,-3722, -120,-1722,-2740, 2294,-3244, 171,-1899, -101, 369, -851,-3834,-3151; M0=-1019; /I: MM=-77; MI=-9961; MD=-4292; IM=-894; II=-1115; DM=-353; DD=-2203; /M: SY='G'; M= -761,-3632, 679, 653,-3953, 1988, 692,-3703, 488,-3648,-2721, 1149, -498, 277, 521, -640,-2097, -675,-3815,-3132; M0=-933; /I: MM=-2; MI=-9947; MD=-10989; IM=-894; II=-1115; DM=-316; DD=-2347; /M: SY='H'; M=-1245,-3678, 306, 772, 333, -19, 1462, -210, -122, 283,-2769, -53, -546, 186, -302, -50, 80, -929,-3865, 986; M0=-218; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M= 936,-3666,-2078, 621, -485,-3198, 666,-3718, 1394,-3677,-2758,-1838, 374,-1401, 334, 825, 1486,-1274,-3856, -90; M0=-918; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='C'; M= 293, 3084,-4812,-4176,-2250,-4018,-2890, 854,-3773, 1003, 666,-3663, -403,-3397, 96,-3103, 213, 1816,-2756,-2414; M0=-1465; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= -630,-3479,-2188,-1638,-3711, -857,-1923, -723, 1130,-1273,-2593, -326, 2901, 632,-2035, -897, -118,-3053,-3718, 1436; M0=-956; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M= -144, 1048,-4809,-4173, 542, -916,-2883, 1309,-3768, -204,-1492,-3657,-4061,-3391,-3569, -170,-2404, 2716,-2749, 288; M0=-1505; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='S'; M= 554, 1242,-6435,-6777,-6361, -874,-5705,-6185,-6387,-6448,-5470,-4765,-4735,-5809,-5978, 3339, 295,-4851,-6584,-6576; M0=-3962; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-2601,-2535,-4392,-3725, -382,-4050,-2811, -693, 784,-1095,-1723,-3460, -465,-3045, 3566,-3123,-2533, -444,-2947, -126; M0=-1759; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= 664,-3687,-2069, -255,-4005, 301, 632,-3754, -120,-1368,-2776,-1830,-3287, 144, 2559, 1050, -549,-3307,-3871, 67; M0=-1007; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-2470,-3887,-2342, -279, -413,-3422, 1060,-3954, 1958,-3883,-2980, 451,-3506,-1570, 1903, -771,-2397,-3525,-4019, 3052; M0=-1658; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='M'; M= 741,-2292,-4745,-4113,-2247,-3998,-2867, -283,-3720, 1331, 1515,-3625,-4049, -240, 1176, 173,-2398, 1419,-2749, 1161; M0=-1344; /I: MM=-2; MI=-10019; MD=-11061; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= 1442,-4295,-2954,-2300, -807,-3887,-2344,-4382, 2683,-4256,-3399, -423, 982, -131, 1640,-2877,-2888,-3988,-4330,-3817; M0=-1889; /I: MM=-2; MI=-9983; MD=-11025; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 817,-3661, -366, 1933,-3982, -496,-1821,-3733, 1485,-3677,-2750, -104,-3255, 785,-1909, 559, -515, -841, 1256,-3162; M0=-1030; /I: MM=-2; MI=-9983; MD=-11025; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-4963,-4399,-7511,-7050, 561,-7341,-6486, 1882,-6931, 2360,-2091,-7028,-6639,-6052,-6650,-6722,-4882, 1851,-5158,-5227; M0=-4161; /I: MM=-2; MI=-9930; MD=-10972; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= -879,-4989,-4337,-3338,-5716,-4716,-2789,-5143, 3049,-4850,-4116, 371,-4696, 25, 2527, -827,-3811,-4848,-4751,-4528; M0=-2757; /I: MM=-2; MI=-9930; MD=-10972; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M= 462,-3628, -275, 2026,-3950,-3127,-1786,-3700, 1450,-1316,-2718,-1763,-3221, 2268, 706, -539,-2095,-3251,-3810,-3128; M0=-1271; /I: MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='A'; M= 1632,-3099,-2296,-1742,-3240,-3247, 893, 167, 947, 965, -360,-1999,-3333, 913, 993, -645, -283,-2622,-3401,-2850; M0=-883; /I: MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -623,-2184,-4701,-4065, 745, 572,-2777, 1401,-3661, 2088, 1724,-3551,-3954,-3283,-3461, -641,-2298,-1594, 1596,-2299; M0=-1487; /I: MM=-2; MI=-9885; MD=-10927; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='W'; M= 529,-3580, -188, 407,-3901, 973, 1959,-3652, 490,-1166,-2669, 777,-3174, 587, -406, 558, -362,-3202, 2262,-3081; M0=-784; /I: MM=-2; MI=-9822; MD=-10864; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= -597,-3446, 426, -107, -271,-3052, 856, 752, 1343, 750, 639, -526,-3144, 515, -78, -516, 38, -715,-3651,-2992; M0=-466; /I: B0=*; E1=-1000;» more |
Numerical results [info]
| Total number of hits | 64 in 64 different sequences |
| Number of true positive hits | 64 in 64 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | PS_Langendijk_Genevaux |
| Feature key [info] | DOMAIN |
| Feature description [info] | HTH LytTR-type |
| Version [info] | 8 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
64 sequences
AGRA_STAAC (Q5HEG2), AGRA_STAAM (Q931H9), AGRA_STAAN (P0A0I5), AGRA_STAAR (Q6GF33), AGRA_STAAS (Q6G7R8), AGRA_STAAU (P0A0I7), AGRA_STAAW (P0A0I6), AGRA_STAEQ (Q5HMY2), AGRA_STAES (Q8CNM5), ALGR_PSEAE (P26275), BTSR_BPVT1 (P0DUE7), BTSR_ECO57 (P0DUE6), BTSR_ECOL6 (P0AFT6), BTSR_ECOLI (P0AFT5), BTSR_SALTI (Q8Z5C1), BTSR_SALTY (Q8ZNN2), BTSR_SHIFL (P59640), LYTR_STAA3 (Q2FK09), LYTR_STAA8 (P60611), LYTR_STAAB (Q2YV67), LYTR_STAAC (Q5HJB5), LYTR_STAAM (P60609), LYTR_STAAN (P60610), LYTR_STAAR (Q6GK51), LYTR_STAAS (Q6GCL1), LYTR_STAAW (Q8NYH3), LYTR_STAEQ (Q5HLG2), LYTR_STAES (Q8CN55), LYTR_STAHJ (Q4L8V4), LYTR_STAS1 (Q4A010), LYTR_STRA3 (Q8E7H3), LYTR_STRA5 (Q8E217), LYTR_STRMU (Q8DVB7), LYTT_BACAN (Q81JL3), LYTT_BACCR (Q814J1), LYTT_BACSU (P94514), LYTT_ENTFA (Q82Z76), LYTT_OCEIH (Q8EQQ3), MRKE_KLEPN (P21649), NATR_BACSU (P70955), RCOM1_PARXL (Q13YL3), RCOM2_PARXL (Q13IY4), RCOM_RHORT (Q2RNI6), Y0G0_VIBCH (Q9KL96), Y2153_STAAN (Q7A3W9), Y2242_STAAB (Q2YZ22), Y2254_STAAS (Q6G6V7), Y2284_STAAW (Q8NV45), Y2310_STAA3 (Q2FED3), Y2360_STAAC (Q5HDJ2), Y2363_STAAM (Q99RR4), Y2449_STAAR (Q6GE71), Y2645_STAA8 (Q2FVQ7), Y2823_SHEON (Q8EDD7), Y3287_YERPE (Q8ZBV2), Y4021_VIBPA (Q87K77), Y503_VIBVU (Q8DET1), Y538_VIBPA (Q87S86), Y693_VIBCH (Q9KU36), Y8J3_VIBVU (Q8D4U6), YPDB_ECO57 (P0AE40), YPDB_ECOL6 (Q8FFE0), YPDB_ECOLI (P0AE39), YPDB_SHIFL (P0AE41)» more
|
| PDB [Detailed view] |
8 PDB
3BS1; 4G4K; 4XQJ; 4XQN; 4XQQ; 4XXE; 4XYO; 4XYQ |