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PROSITE entry PS50929


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50929
Entry name [info] ABC_TM1F
Accession [info] PS50929
Entry type [info] MATRIX
Date [info] 01-NOV-2003 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00364
Associated ProRule [info] PRU00441

Name and characterization of the entry

Description [info] ABC transporter integral membrane type-1 fused domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=276;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=276;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0192864; R2=0.0019014; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=3777; N_SCORE=9.2; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=2357; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B0=-100; B1=-600; E0=-100; E1=-600; MM=*; II=*;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 826 in 587 different sequences
Number of true positive hits 826 in 587 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.76 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] V_Lesaux
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
587 sequences

AARD_PROST  (Q52402), AB10B_ARATH (Q9SGY1), AB10C_ARATH (Q9LYS2), 
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UniProtKB/Swiss-Prot
False negative sequences
2 sequences

FAPD_PSEAE  (Q9I2F1), FAPD_PSEFL  (P0DXF6)

		
PDB
[Detailed view]
365 PDB

2HYD; 2ONJ; 3B5W; 3B5X; 3B5Y; 3B5Z; 3B60; 3G5U; 3G60; 3G61; 3QF4; 3ZDQ;
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