PROSITE logo

PROSITE entry PS50928


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS50928

Direct ScanProsite submission
General information about the entry

Entry name [info] ABC_TM1
Accession [info] PS50928
Entry type [info] MATRIX
Date [info] 01-NOV-2003 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00364
Associated ProRule [info] PRU00441

Name and characterization of the entry

Description [info] ABC transporter integral membrane type-1 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=196;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=191;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4184906; R2=0.0217733; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=280; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=188; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 545 in 526 different sequences
Number of true positive hits 545 in 526 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] V_Lesaux
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
526 sequences

AAPM_RHIJ3  (Q52814), AAPQ_RHIJ3  (Q52813), AFUB_ECOLI  (P75681), 
» more

PDB
[Detailed view]
32 PDB

2ONK; 2R6G; 3DHW; 3FH6; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3RLF; 3TUI;
» more