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PROSITE entry PS50920


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PURL: https://purl.expasy.org/prosite/signature/PS50920

Direct ScanProsite submission
General information about the entry

Entry name [info] SOLCAR
Accession [info] PS50920
Entry type [info] MATRIX
Date [info] 01-AUG-2003 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00189
Associated ProRule [info] PRU00282

Name and characterization of the entry

Description [info] Solute carrier (Solcar) repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=91;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=91;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4543622; R2=0.0214531; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=282; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=156; N_SCORE=5.8; MODE=1; TEXT='RR';
/DEFAULT: B0=-100; E0=-100; M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 1'461 in 497 different sequences
Number of true positive hits 1'461 in 497 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.93 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 3
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] REPEAT
Feature description [info] Solcar
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
497 sequences

ADNT1_ARATH (O04619), ADT1_ANOGA  (Q27238), ADT1_ARATH  (P31167), 
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

UGO1_YEAST  (Q03327)

		
PDB
[Detailed view]
12 PDB

1OKC; 2C3E; 2LCK; 4C9G; 4C9H; 4C9J; 4C9Q; 6GCI; 8G8W; 8HBV; 8HBW; 8J1N