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PROSITE entry PS50893


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50893
Entry name [info] ABC_TRANSPORTER_2
Accession [info] PS50893
Entry type [info] MATRIX
Date [info] 01-JAN-2003 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00185
Associated ProRule [info] PRU00434; PRU01700

Name and characterization of the entry

Description [info] ATP-binding cassette, ABC transporter-type domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=240;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=235;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=5.7291522; R2=0.0066693; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=27511.1894531; R2=19.6396694; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=431; H_SCORE=35976; N_SCORE=8.6; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=116; H_SCORE=29789; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B0=*; B1=*; E0=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 5'005 in 4'166 different sequences
Number of true positive hits 5'005 in 4'166 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 7
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.86 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Feature key [info] DOMAIN
Feature description [info] ABC transporter
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
4166 sequences

AAPP_RHIJ3  (Q52815), AARD_PROST  (Q52402), AB10A_ARATH (Q9FLT4), 
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

AB3E_ARATH  (Q9M0D0), FAPD_PSEAE  (Q9I2F1), FAPD_PSEFL  (P0DXF6), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
7 sequences

CHVD_RHIRD  (P12622), LPTB_PSEPU  (P20162), MALK_PHOLU  (P41124), 
» more

PDB
[Detailed view]
728 PDB

1B0U; 1F3O; 1G29; 1G6H; 1G9X; 1GAJ; 1JJ7; 1L2T; 1L7V; 1MT0; 1MV5; 1OXS;
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