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PROSITE entry PS50892


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50892
Entry name [info] V_SNARE
Accession [info] PS50892
Entry type [info] MATRIX
Date [info] 01-DEC-2002 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50892
Associated ProRule [info] PRU00290

Name and characterization of the entry

Description [info] v-SNARE coiled-coil homology domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=61;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=56;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0112000; R2=0.0137780; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3234.0014648; R2=3.8873038; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=471; H_SCORE=5065; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=326; H_SCORE=4501; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-7; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 104 in 104 different sequences
Number of true positive hits 104 in 104 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20_shuffled
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] v-SNARE coiled-coil homology
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
104 sequences

NSYB_DROME  (Q9W0C1), NYV1_YEAST  (Q12255), S22BA_DANRE (Q7ZV15), 
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PDB
[Detailed view]
59 PDB

1GL2; 1KIL; 1L4A; 1N7S; 1SFC; 1URQ; 2KOG; 2N1T; 2NPS; 2NUP; 2NUT; 3B5N;
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