PROSITE logo

PROSITE entry PS50886


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50886
Entry name [info] TRBD
Accession [info] PS50886
Entry type [info] MATRIX
Date [info] 01-NOV-2002 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50886
Associated ProRule [info] PRU00209

Name and characterization of the entry

Description [info] tRNA-binding domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=107;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=102;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3383000; R2=0.0240740; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=5564.4296875; R2=3.7626865; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=319; H_SCORE=6765; N_SCORE=10.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=173; H_SCORE=6215; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-50; I=-50; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 633 in 633 different sequences
Number of true positive hits 633 in 633 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] tRNA-binding
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
633 sequences

AIMP1_CRIGR (O54873), AIMP1_HUMAN (Q12904), AIMP1_MOUSE (P31230), 
» more

PDB
[Detailed view]
45 PDB

1B70; 1B7Y; 1E7Z; 1EIY; 1EUJ; 1FL0; 1JJC; 1MKH; 1NTG; 1PYS; 1RQG; 2AKW;
» more