PROSITE logo

PROSITE entry PS50861


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50861
Entry name [info] AA_TRNA_LIGASE_II_GLYAB
Accession [info] PS50861
Entry type [info] MATRIX
Date [info] 01-MAY-2002 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00363

Name and characterization of the entry

Description [info] Heterodimeric glycyl-transfer RNA synthetases family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=278;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=273;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.8031000; R2=0.0256218; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=16270.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=301; H_SCORE=16270; N_SCORE=8.5; MODE=1;
/CUT_OFF: LEVEL=-1; SCORE=223; H_SCORE=16270; N_SCORE=6.5; MODE=1;
/DEFAULT: M0=-8; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 747 in 742 different sequences
Number of true positive hits 747 in 742 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.87 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Matrix type [info] protein_domain
Scaling database [info] window20_shuffled
Author [info] N_Hulo
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
742 sequences

SYGA_ACAM1  (B0CEQ4), SYGA_ACIET  (B9MCM3), SYGA_ACISJ  (A1W3F2), 
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

SYGB_MORCA  (P77891)

		
PDB
[Detailed view]
9 PDB

1J5W; 3RF1; 3RGL; 3UFG; 5F5W; 7EIV; 7QCF; 7YSE; 8IE2