PROSITE logo

PROSITE entry PS50855


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50855
Entry name [info] COX1
Accession [info] PS50855
Entry type [info] MATRIX
Date [info] 01-JUN-2004 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00074

Name and characterization of the entry

Description [info] Cytochrome oxidase subunit I profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=517;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=512;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2147000; R2=0.0087155; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=40411.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=951; H_SCORE=40411; N_SCORE=9.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=607; H_SCORE=40411; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-9; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 258 in 258 different sequences
Number of true positive hits 258 in 258 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.61 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] N_Hulo
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
258 sequences

AI2M_YEAST  (P03876), AI2_DEBHA   (A9RAH7), AI2_MYCMD   (Q0H8X8), 
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

AI5B_YEAST  (Q9ZZX0)

		
PDB
[Detailed view]
196 PDB

1AR1; 1EHK; 1FFT; 1M56; 1M57; 1OCC; 1OCO; 1OCR; 1OCZ; 1QLE; 1V54; 1V55;
» more