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PROSITE entry PS50830


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50830
Entry name [info] TNASE_3
Accession [info] PS50830
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00865
Associated ProRule [info] PRU00272

Name and characterization of the entry

Description [info] Thermonuclease domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=134;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=129;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.6719000; R2=0.0191183; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=8292.8398438; R2=6.2695923; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=828; H_SCORE=13484; N_SCORE=16.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=410; H_SCORE=10863; N_SCORE=8.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 128 in 98 different sequences
Number of true positive hits 128 in 98 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] TNase-like
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
98 sequences

CAN1_ARATH  (F4IZC5), CAN1_ORYSJ  (Q942N7), CAN2_ARATH  (F4IH31), 
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PDB
[Detailed view]
327 PDB

1A2T; 1A2U; 1A3T; 1A3U; 1A3V; 1AEX; 1ENA; 1ENC; 1EQV; 1EY0; 1EY4; 1EY5;
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