PROSITE logo

PROSITE entry PS50600


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50600
Entry name [info] ULP_PROTEASE
Accession [info] PS50600
Entry type [info] MATRIX
Date [info] 01-APR-2002 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50600

Name and characterization of the entry

Description [info] Ubiquitin-like protease family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=176;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=171;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.6647000; R2=0.0125284; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=11092.2392578; R2=5.0040898; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=546; H_SCORE=13824; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=386; H_SCORE=13024; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105; M0=-7;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 42 in 42 different sequences
Number of true positive hits 42 in 42 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 12
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 77.78 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] L_Falquet
Version [info] 7

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
42 sequences

CDUB1_CHLT2 (B0B9A0), CDUB1_CHLTR (O84876), ESD4_ARATH  (Q94F30), 
» more

UniProtKB/Swiss-Prot
False negative sequences
12 sequences

CDUB1_CHLTA (Q3KKG8), CDUB1_CHLTB (B0BAX9), CDUB1_CHLTJ (C4PQR0), 
» more

PDB
[Detailed view]
37 PDB

1EUV; 1TGZ; 1TH0; 1XT9; 2BKQ; 2BKR; 2CKG; 2CKH; 2G4D; 2HKP; 2HL8; 2HL9;
» more