PROSITE entry PS50330
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PURL: https://purl.expasy.org/prosite/signature/PS50330
Direct ScanProsite submission
General information about the entry
Entry name [info] | UIM |
Accession [info] | PS50330 |
Entry type [info] | MATRIX |
Date [info] |
01-MAY-2003 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC50330 |
Associated ProRule [info] | PRU00213 |
Name and characterization of the entry
Description [info] | Ubiquitin-interacting motif (UIM) domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=20; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=20; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2009000; R2=0.0080229; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1468.8551025; R2=0.3444180; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=910; H_SCORE=1782; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=599; H_SCORE=1675; N_SCORE=6.0; MODE=1; TEXT='?'; /DEFAULT: B1=-128; E1=-128; MI=0; MD=0; IM=0; ID=0; DM=0; DI=0; M0=-15; ...» more |
Numerical results [info]
Total number of hits | 214 in 131 different sequences |
Number of true positive hits | 210 in 127 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 4 in 4 different sequences |
Number of false negative sequences | 41 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 98.13 % |
Recall (true positives / (true positives + false negatives)) | 83.67 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 3 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | K_Hofmann |
Feature key [info] | DOMAIN |
Feature description [info] | UIM |
Version [info] | 5 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
127 sequences
AKIB1_DANRE (Q1L8G6), AKIB1_HUMAN (Q9P2G1), AKIB1_MOUSE (Q6ZPS6),» more
|
UniProtKB/Swiss-Prot False negative sequences |
41 sequences
ASB2_BOVIN (Q3SX45), ASB2_HUMAN (Q96Q27), ASB2_RAT(Q5U2S6),» more |
UniProtKB/Swiss-Prot False positive sequences |
4 sequences
MPH1_ASPNC (A2Q8R2), MPH1_ASPTN (Q0CWI2), MPH1_NEOFI (A1D4V5),» more |
PDB [Detailed view] |
136 PDB
1O06; 1P9C; 1P9D; 1Q0V; 1Q0W; 1UEL; 1YX4; 1YX5; 1YX6; 2D3G; 2KDE; 2KDF; » more |