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PROSITE entry PS50280


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PURL: https://purl.expasy.org/prosite/signature/PS50280

Direct ScanProsite submission
General information about the entry

Entry name [info] SET
Accession [info] PS50280
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
26-FEB-2020 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50280
Associated ProRule [info] PRU00190

Name and characterization of the entry

Description [info] SET domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=130;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=125;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1733967; R2=0.0052056; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=16593.4804688; R2=2.7213621; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1408; H_SCORE=20425; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=1024; H_SCORE=19380; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-36; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 372 in 372 different sequences
Number of true positive hits 372 in 372 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.47 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SET
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
372 sequences

ASH1L_HUMAN (Q9NR48), ASH1L_MOUSE (Q99MY8), ASH1_DROME  (Q9VW15), 
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UniProtKB/Swiss-Prot
False negative sequences
2 sequences

SET26_CAEEL (Q9U263), SET9_CAEEL  (O44498)

		
PDB
[Detailed view]
362 PDB

1H3I; 1ML9; 1MLV; 1MT6; 1MUF; 1MVH; 1MVX; 1N6A; 1N6C; 1O9S; 1OZV; 1P0Y;
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