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PROSITE entry PS50253


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PURL: https://purl.expasy.org/prosite/signature/PS50253

Direct ScanProsite submission
General information about the entry

Entry name [info] COX3
Accession [info] PS50253
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50253

Name and characterization of the entry

Description [info] Heme-copper oxidase subunit III family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=260;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=255;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0529001; R2=0.0072385; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-17325.1738281; R2=40.0542870; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=891; H_SCORE=18363; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=615; H_SCORE=7308; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; MM=1; M0=-10;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 210 in 210 different sequences
Number of true positive hits 210 in 210 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
210 sequences

AOX1_AERPE  (Q9YDX6), COX13_THET8 (P98005), COX3_ACACA  (Q37374), 
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PDB
[Detailed view]
135 PDB

1FFT; 1OCC; 1OCO; 1OCR; 1OCZ; 1QLE; 1V54; 1V55; 2DYR; 2DYS; 2EIJ; 2EIK;
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