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PROSITE entry PS50164


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50164
Entry name [info] GIY_YIG
Accession [info] PS50164
Entry type [info] MATRIX
Date [info] 01-SEP-2002 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50164
Associated ProRule [info] PRU00977

Name and characterization of the entry

Description [info] GIY-YIG domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=79;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=74;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3045044; R2=0.0071436; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=12047.1435547; R2=2.2462082; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=1050; H_SCORE=14406; N_SCORE=9.8; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=588; H_SCORE=13368; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-38; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 827 in 827 different sequences
Number of true positive hits 827 in 827 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.52 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] GIY-YIG
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
827 sequences

146R_IIV6   (O55751), 242L_IIV6   (Q91FT0), ANKL1_CAEEL (G5EGA3), 
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UniProtKB/Swiss-Prot
False negative sequences
4 sequences

ET1_ARATH   (F4JU69), ET2_ARATH   (F4K933), ET3_ARATH   (Q9FJT6), 
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PDB
[Detailed view]
18 PDB

1LN0; 1MK0; 1YCZ; 1YD0; 1YD1; 1YD2; 1YD3; 1YD4; 1YD5; 1YD6; 1YWL; 1ZG2;
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